AMCG00002619


Basic Information

Item Value
gene id AMCG00002619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23028636 ~ 23033585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002619
TAActagttcagtgtgtgtgtttacatccTCTGTGTTTTCCGCATTACCTTAACGATGCAGAGTTAAAAGGGTTATCTGATCACAGACACTTCAGGGGAACAGCGAAATATACAGACGGCATAAGTGCGTCTCCATGAACAACCTGAATGATCCTCCTGGGTGGAATATCCAACCAAACCAGCGAGGGGATGGGGATGGAAACAAGTGGAATTATGCCCTCCTAGTGCCAATGTTGGGCCTGGCTGCCTTCAGATGGATCTGGACCAGAGAGTCACAAAAGGAGATCCGGGAAGTGAAAGCAAAGTACAACCAAGACATGGAGTCCATAGCCCAGAATCTGGAGATGAAGTACAAGGAAGCTGTCCTGGAGAGCCGACGGGCCGCGGCTCACCTGGAGCTGCAGCTGGAGAAAGAGCGCCAGAGAGTGCAGGGCTACAGGCAGGCCCTCATGTCTCAGAGTCAGCAGCTTTTGGCAGAAAGAAAGCAACTGCAGCAGGACCGGGAGAAACTGGAAATGGAGAAAAATCAGCTTTTGCAGTCGGGTGCGGCGGGAGCCCTCTTGCGCAGTGCTTTGCAACGGGAAACCTTCTGGCAGCGTAAGGCCACGCTAGTCTTGAAGGAATTCGAAGAGGCATTGGTAGAACGGCAGAGTGCCTACTGCAGCGTCCTCCTGCCACGAGAGAAGCGCTTTGAGATGGAGAAGAACGTGCTCATCAAAGCCGCCAAAGACCCGCTCGCTGCTGAACTGAACATGGAAGcagatataaaatacattttcaaacacgACAAGCATTGCGCCGATCTTATGAACACAGACAAGCGCAAGAACGGCAGGCTGATGTGGCTTTACCTCAGGTACTGGGAGCTGCAAGTTGAGCTGCAGAAGTTTAAGCGAGTGGAGCGCTCTGTTGCTGGAACGCCGCCGAACTCTCAGTGACTTTGCAGCAAGACATAAAAACTTGAATCACCAATAGCCACCTGGAAGCTTTACGTTTCTTTTGCACTTCTGTAAGTCGGGAAAAGGGAGCTTTAAAGACAGGGATGCTGAACTCAGATGGAAGTGGATAGTAGACATCGTTGAGTTGCACGTGAACTGTAAAACTCATTTTCTTTCAGtataagaataattaaaaccattaagTGTCTGAAAGGAAAATCTATGctacttaatttaataaaaaagctGTATGTTATTTACTGCATGCCTATCATAGGGTATGTAAAGTGGTCAAACACCATAGATTGAAATACAATCATTAGTCTATCTTCAGATTATTGAATTAATATcatcataaatatttaattaataaagttctGTAAGTCACTGTTAAGcacttttcaaattatatatttataagaacTTAAATATGCAAAACGAAAAGAAAAGGTAATCACCTGAGGGGTTAAGGTATCTCAATAATATAACATTCTGTCATTAGGAAAGCACAGTTATATGCACAGAAAGAGCCTGATTTTTCCTGTAAGCAAATTGTGGGCTTACTGCCTGTGTAACTAATTTTGTTAATTCATACTCATGTATAATAGATCCATTTGTCTTCATCTGACGAGCCACCACTGGGCTTGTTGGGTTTGAACACCTCTAAAGGTCTGTTGTGGCTCATCAGATGAAGACAAATGCATCTGGCCTGTGTGAAATACTGGGACTTTTCCGGAACCTATTTCATTGACTTCAAATGCATAATGAAGCACTTCACTGTAGTTACTGCCATACTTCTTTGGTCTGAGTGGTTTCTAAGAGGACTGGCTGTCATCATTTAACACTAAAGACGttgttataataaaatatacagtatagttCTGAAGCTCAGTGGCAGGAATAGCTGAAAGTATTGCAGTTAACATTTCCACCACTTGATGTCAATGTACTCCACTCGGTGCGGTTTAAGAGGAGTATTTTTGTTCATGTATATACAGTCCCCTGTATCGATTGAAAGTAACACAGGATTCGATGTGATGAATTCTACAGCactgtgtgtcctgtgtcctgtctactgcactgtgtgtcctacaaaatatacacagggATTTCTTGGTAGGTGAAATTATGAGCTGGGCGATATATTTGTTGTGTTAAGTCTACTGTTTGATTTTCTTGGCGTCTGTTCAATAATCAACTCAAGAAACATACACAGTAATATCTCTTCTGCAGCACCAACACATTATCATTTGTGAATTCACAATCTGGCTAATAAGATTAAAATGATAGCAGATTGATCCAATAATATGGTCAGTGTTGTTTCAGGTCATGATTGTAATAACCATATACATATAGGACCAGGACTAATACAGGTATGCAAAAGCTagaaaaaggtttaattttgttttactcatgGTTTCAACTACATTTATGATGAATTTTTGAACATAAAAAAACTGCACCCTTGCATATTTTGTGTCCTGTTTCCCAAATAAGTAAATGGTATTGCAAATTCCAGTTGTACCCATAGATCTTTTTCACAGAGTTGTGTACTGcagatgtgtttgttgttgttgttattcatattatagCTTTTATGAACTGGACAGGATAAGTTTTTCCTGCAGTGTTTCTACACAAATGCCAGGATACAGTGCAGTGGCTTTCACTGTTGGTGTGTGGTCTTCGGCTGTGGGGGTGTCTGAAAACAGTGTGTCACATCTTACCGTTCTgtgtaaataaaggaaaaagtgGGGAAAGCAATTTTGATAAATCTGTGTAATTTGATTTACCTACATGTTGAGCATTACAGTTCCAGTGGTGTTCAGTAACATCcctgttattatttaatatgtgtcCGTGATAtaagtgagtgtatattattctGTGTGCTTTGTAGATCTGATCAGCACATAACAAGTGACAATTTGATTAGTTAACTGTTCACTACAATCCACAGATGTGGGTCTTTCGGACTGGCGGGTGTTAGTATAACTCTTTGTACAGCTCACTTGGAAGGTTAATTTCCCAGCAGTCTCCAAACATCAAATAACTCCTGTCTCTCTGTAATTCAATTGGTAGTATCTTTTGTTCATTAATCAAGGTGCTGTTGGCTTGATGTTTTCTATTGAGTCTTCAGAAAACTGAAGACAATCCCTACGGGAGAAATGTTATAAGCAGGTAAGCCTGGCTCTTCCTGTCTGGACCCTGCacgttatttttattatctcGGTCaaccctttttaattttttcatagCTCATAACAGAtcctttaattaataaaaaagagaaagaagaaattaaatctgtacaatgttttttttttatatataggaACTCTGCTGTTCTACACATTTGTTTagatcaggggtgtcagactccagtcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002619 True 3328 mRNA 0.41 3 23028636 23033585

Neighbor

gene id symbol gene type direction distance location
AMCG00002621 NA coding upstream 29151 22996873 ~ 22999485 (+)
AMCG00002613 NA coding upstream 76808 22947203 ~ 22951828 (+)
AMCG00002612 LOC103360969 coding upstream 82715 22927289 ~ 22945921 (+)
AMCG00002618 NA coding upstream 122124 22904029 ~ 22906512 (+)
AMCG00002609 NA coding upstream 432348 22564822 ~ 22596288 (+)
AMCG00002624 NA coding downstream 10239 23043824 ~ 23055716 (+)
AMCG00002620 NA coding downstream 23197 23056782 ~ 23067800 (+)
AMCG00002630 NA coding downstream 373981 23407566 ~ 23407966 (+)
AMCG00002631 NA coding downstream 619387 23652972 ~ 23677437 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding downstream 933993 23967578 ~ 23985386 (+)
G124668 NA non-coding upstream 16636 23011435 ~ 23012000 (+)
G124667 NA non-coding upstream 25384 23002991 ~ 23003252 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding upstream 26404 23001788 ~ 23002232 (+)
G124658 NA non-coding upstream 36876 22990571 ~ 22991760 (+)
G124601 NA non-coding upstream 115957 22859923 ~ 22912679 (+)
G124687 NA non-coding downstream 184745 23218330 ~ 23276775 (+)
G124740 NA non-coding downstream 388388 23421973 ~ 23436320 (+)
G124750 NA non-coding downstream 572952 23606537 ~ 23606839 (+)
G124770 zfpm2 non-coding downstream 648428 23682013 ~ 23682226 (+)
G124774 NA non-coding downstream 796085 23829670 ~ 23829984 (+)
AMCG00002622 NA other upstream 38472 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 2695606 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3895069 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3900689 19073693 ~ 19127947 (+)
G123989 NA other upstream 4190105 18832014 ~ 18838531 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 34539 23068124 ~ 23180043 (+)
G124689 NA other downstream 119063 23152648 ~ 23290535 (+)
G124769 NA other downstream 644350 23677935 ~ 23681385 (+)
G124863 NA other downstream 1388667 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1728299 24761884 ~ 24776815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010205 ccdc127a coding NC_007127.7 CM002900.2 43347966 ~ 43350505 (+)