CI01000320_00935826_00945755 (LRP12)


Basic Information

Item Value
gene id CI01000320_00935826_00945755
gene name LRP12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 934432 ~ 945755 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00935826_00945755.mRNA
GAAATGCAGTTTCTTCGGAGCACAGCGAGAATGTATATGTGTCTGGAATGTCAAACGCCTGTGGAGATGTAGCGGAGCAGATAAGGGCATCCAGTGGAGTGATAACCAGCCCTGGTTGGCCCTTTGAATACCCTTCTCGAATCAACTGCAGCTGGAACATCAGGGCCAACCCTGGAGAGATCATCACCATCAGTTTTCAGGACTTTGAAATTCAGAGCTCACACCGATGTGGTTTAGACTGGATCTCCATTGGCACCTACAAGAACCTGGATGGGTACCGGGCCTGTGGATCATCTATTCCGGCCCCATACATTTCCTCTCAGGATCACGTGTGGATCAAGTTCCACTCTGATGACAGCATGACTGGAAAAGGCTTCAGGCTCTCTTACATAACAGGGAAATCAGAAGAAGCCAGTTGCAAGCCTGACCAATTCCACTGTGCTAATGGGAAGTGTATCCCGGAGTCATGGAAGTGTAACACCATGGATGAATGTGGCGATAACTCAGATGAGGAGCTGTGTGTACAGCCAAACCCCTCCGCGTTCTTCTCCTTCCAACCCTGCGCCTTTAACCAGTTCCCTTGTCTCTCTCGCTACACCCGTGTTTATACCTGTCTGCCAGAGTCCCTCAAATGTGATGGTAGCATTGACTGTCAAGACTTGGGTGATGAGATCGACTGTGACGTGCCCACCTGTGGCGAATGGCTACGCAATTTTTATGGTACTTTCAGCTCACCCAACTATCCTGACTTCTATCCACCTGGTAGCAACTGCACCTGGCTGATTGACACTGGTGACCACCGTAAAGTTATCTTACGCTTTATGGACTTCAAGCTGGATGGCACAGGTTATGGCGATTATGTTAAAGTCTATGATGGATTAGAGGAGAACCCTAGGCGTCTGTTGCGAGTGTTGACGGCATTTGACTCTCGAGCCCCTGTAGCGGTGGTGTCATCTTCAGGACAGCTTCGGATACACTTTTATGCAGACAAAATCAATGCGGCTCGAGGCTTTAATGTTACGTATCAAGTAGATGGCTTCTGCTTGCCATGGGAAATCCCATGTGGAGGGAACTGGGGTTGCTACACTGAACAACAGCGCTGTGACGGCTACTGGCACTGTCCCAATGGCAGGGATGAGCTCAACTGCAGCAACTGCCAGGAGGATGAGTTCCCATGCTCACGAAACGGTGCCTGCTACCCACGTTCTGACCGGTGCAACTACCAGAACCGTTGCCCAAATGGCTCTGATGAGAAGAACTGCTTTTTCTGCCAACCCGGAAACTTCCACTGCAAGAACAACCGCTGTGTTTTTGAAAGCTGGGTGTGTGATGCGCAAGATGACTGTGGGGACGGAAGTGATGAAGAGAGTTGTCCAGTAATTGTACCCACACGAGTAATTACTGCCGCTGTAATCGGGAGTCTGATCTGCGGCCTGCTACTGGTCATTGCTCTGGGCTGCACCTGCAAATTGTACTCACTCAGGATGTTTGAGCGCAGGTCATTTGAGACTCAGCTCTCTAGAGTGGAAGCTGAGTTACTGCGAAGAGAAGCCCCTCCCTCATATGGGCAGCTGATTGCTCAAGGACTGATTCCCCCAGTGGAAGATTTTCCTGTCTGCTCTGGTAATCAGGCATCTGTTTTAGAAAACCTAAGACTGGCAGTTCGTTCTCAGCTGGGATTCACCTCAATCCGACTCCCCACCACAGGACGCCATGGCAACATCTGGAGACGCCTGTTCAATTTCACACGTTCACGGCGATCTGGTTCTCTTGCACTAGTGTCTGCGGACACTGAAGAGGGTCCTGATGGCAGTGCCTCAGCACGTGAGCCGGAGAGGCTTGGCTCTCACCGTGGGCTCTTGCCCTTGGACTCCGATGACACAGACACTGAAAGTGACCACCATCCCCGCAGGGATGTCCCTGGAGCTGTTGGAGGCCTCATGGCCCCACTACCACAGAAGACCCCCCCTACAACAGCCGTGGAAGCCATCGTCTCGGTGTCTGCCAGCTCTGCCCCACTGGTCAGCCGAGAGAGCAGCATTTCTGAGAGCATCTCAGAAAGTTCTGGAGTAACTGGACCTCCGTGTACTACTACTACTACTGCAAGGAGCCACTTCAGCAGTGCTTTAAGCCGGGTCACCCGCAGCCTGCGCTGGATTCGTTTCTCTCTAGGTCGCTCTGGCGACGGAGGGTCAAGTGGCATTGGGCAGAATCACAGCCCTCTGCGGCAACTGGAGCAAGGAAGTGCGGGCTGTACTGGTGTCGGCATTAGGGGCGAGGATGAGGATGACGTGGAACTCCTCATTCCTGTCTCAGATGCTGGCTCCCTGGACAGTGATGAGAGCTCCAGGCCCCTGCTGGAACAAGGCCTGGAGCAGGCTTTTGTGCCCCACCTAGCCCCCACTGCCGTCTCTCTCAGAGGCCGACTGGTGGGTAGGGACGGCCCCTGTGAACACTGTGGAATTGTCCATACGGCGCAGATCCCAGACGCTTGTCTGGAAGCAACAGCGAAAACAGAAACTAGTGATGATGAGTCACTGCTGCTCTGTTAAGACTCAAGAACTGCCCATATGACTAAAATGCCCCTGCTCACAGCTTGCCATTTCTGTTATCGCCCCCTAGTGGAGCGGAGGTTGAATGTCTTTAGACACGTGTCCTCTTATATAACGAAGAGCTTCAGAAATCAGGTACTTTTAAAGAGCAGTCTGTAAAAATTATACAGAGTACGAGAACTCCCCAATCCCACTGTCCCTTCCACTGTGCAATATTAGTATTCATTGAGATGTTTACCAGGTCAAAGTCTATTTTTCTGAAGAGTCAAATTAAGCTCACATAGAGTAGAAAGTGAGCCACTCTGCAGTTCTCAGTATGGGAAAGCAGCACAAACAAATGCATCTATCCTGGACAGTGTGGAACAACGAAAGACTGAACACATCCGAGCCCTCGGAGAGATTTGTTATCTAACCTTTTAATTTATTTGTACATTTGATGTCAGACATTTGTTTTATTAAAGGAATGGTTGACCCAAAAACTCACTCAACCTCATGTTGTTCCAGACATGCAATTTGTGGAGTTATTTTGAATAATGTCCTCAAAGCTTTTTTTCTATACAGTGAAAGTGAATAGTGACGGGCTGTCCGGCATCTAAAACGATGATAAAACGGTACATGTGCATATGGCGTATCAAGGTACATTGTGTTATATTTGGCATCGAATGTCATTGGTTCTGGTTTATTGGGTGAGGGTGATTTTTCAACGATTAACACAAAAGTCTTATGGACTTATTTCAGGGTTTTTTTTTGTTCCTATTGTATGGAAAAGAGTGGCTTGGACATTCTGCAAAGTTTTTTGTTTTAGGAGTAAAAAAATACCCTTCAATCAAAGTAATTTTGTATTTCATAGAAGAAAGTCAGATGGGTTTGGAACAGATGAACAAATAACAGAATTTTCCTTTTGAGTAAAATTATTCTTTTAACTGCTTGCAAAAATTTGGATATCGAACAAAAAATTTGGTACGTTTGTTCATTTCAGCGTGAGTTTGGTCCCTGCTGCAGTGGTACTATGTGCGTTACATGCAAATTTGAGCGAGGGTCATTTATTTATAACAGAGTATAATCTGAGGGAGCTATTTTTAAAAGGATGTTGCATTGTATAACAGCCACTTTTGTTTGTTGTATTTATTTTTTGTTATCGTTAACCTTTTGGTAACCTTACTGTTTTGGTACTGAGAATTGTGTGAGTGTGTATATTTATTGGTTTTCATTTCGATAGCGTTTACTTGAAAAGCATGTCCAGCTGTCTTGTGCTTATTTTTTCCATTTCATAATGCGGTGTTAATATATATATATCTATATAATTATATACACACACACACACACACACACACATGCAAAAGATATATATATAAAGATAAAAAGAAAAATGTTTACTGCACCAAGAGAATAAA

Function

symbol description
lrp12 Orthologous to human LRP12 (LDL receptor related protein 12).

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00935826_00945755.mRNA True 3946 mRNA 0.47 6 934432 945755

Neighbor

gene id symbol gene type direction distance location
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding downstream 175326 745030 ~ 759106 (-)
CI01000320_00688829_00696138 NA coding downstream 238244 688688 ~ 696188 (-)
CI01000320_00586900_00592523 FAM210AA coding downstream 341909 585993 ~ 592523 (-)
CI01000320_00442550_00456381 PTPN2B coding downstream 478045 442124 ~ 456387 (-)
CI01000320_00420198_00423170 NA coding downstream 511262 419963 ~ 423170 (-)
CI01000320_01042859_01043564 NA coding upstream 96269 1042024 ~ 1043564 (-)
CI01000320_01176457_01181900 NA coding upstream 228980 1174735 ~ 1181900 (-)
CI01000320_01207179_01217428 EPB41 coding upstream 261424 1207179 ~ 1217438 (-)
CI01000320_01263151_01266426 CTGFB coding upstream 317284 1263039 ~ 1266426 (-)
CI01000320_01310476_01318751 STX12 coding upstream 364589 1310344 ~ 1318751 (-)
G454639 NA non-coding downstream 8123 926064 ~ 926309 (-)
G454615 NA non-coding downstream 67141 849157 ~ 867291 (-)
G454593 NA non-coding downstream 198526 733458 ~ 735906 (-)
G454545 NA non-coding downstream 205065 650216 ~ 729367 (-)
G454586 NA non-coding downstream 210067 722955 ~ 724365 (-)
G454649 NA non-coding upstream 36828 982583 ~ 982844 (-)
G454650 NA non-coding upstream 56734 1002489 ~ 1002717 (-)
G454651 NA non-coding upstream 58535 1004290 ~ 1004509 (-)
G454652 NA non-coding upstream 59068 1004823 ~ 1005133 (-)
G454653 NA non-coding upstream 59445 1005200 ~ 1005599 (-)
G454495 NA other downstream 405880 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 584230 346199 ~ 349445 (-)
G454663 NA other upstream 105713 1051468 ~ 1055895 (-)
G454686 NA other upstream 195487 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 390524 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 481028 1426176 ~ 1430654 (-)
G456317 NA other upstream 2697482 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013939 lrp12 coding NC_007130.7 CM002903.2 13375838 ~ 13397295 (+)
bowfin (Amia calva) AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding CM030136.1 CM030136.1 23967578 ~ 23985386 (+)