G454495


Basic Information

Item Value
gene id G454495
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 527059 ~ 528552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU521809
GTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATGTAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACATTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGCCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTTGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCTCCTCAGTGCAAGACACATGAAAGCCTGCATGGAGTTTGCTAAAATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGCTGCAG
>TU521811
CGATAATATAGTTACATTTTGCGACGAAATAAAAAATAAACTAGATGAGCTATATAGTGTATCACCTTGCGCAAGGATACTGCATGTATGCGGGAAAAGTTATAATTTTATATCCTACTTTATACAGTGGGTATGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCATTTTTTTCCCTCATTAAAATATACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAACGAAAAACTGAAATATCACATAGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATGTAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACATTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGCCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTTGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCTCCTCAGTGCAAGACACATGAAAGCCTGCATGGAGTTTGCTAAAATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGCTGCAG
>TU521812
GTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATGTAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACATTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGCCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTTGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCTCCTCAGTGCAAGACACATGAAAGCCTGCATGGAGTTTGCTAAAATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGCTGCAG
>TU521813
GTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATGTAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTTGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU521809 False 762 TUCP 0.48 2 527059 528210
TU521811 False 1104 TUCP 0.43 2 527059 528552
TU521812 False 762 TUCP 0.48 2 527059 528210
TU521813 True 423 lncRNA 0.47 2 527277 528210

Neighbor

gene id symbol gene type direction distance location
CI01000320_00442550_00456381 PTPN2B coding downstream 70890 442124 ~ 456387 (-)
CI01000320_00420198_00423170 NA coding downstream 104107 419963 ~ 423170 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 133820 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 177832 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 183498 331481 ~ 343779 (-)
CI01000320_00586900_00592523 FAM210AA coding upstream 57783 585993 ~ 592523 (-)
CI01000320_00688829_00696138 NA coding upstream 160478 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 216820 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 406222 934432 ~ 945755 (-)
CI01000320_01042859_01043564 NA coding upstream 513814 1042024 ~ 1043564 (-)
G454460 NA non-coding downstream 38415 488541 ~ 488862 (-)
G454459 NA non-coding downstream 38804 488227 ~ 488473 (-)
G454445 NA non-coding downstream 45649 481273 ~ 481628 (-)
G454432 NA non-coding downstream 46680 479069 ~ 480597 (-)
G454442 NA non-coding downstream 94306 432453 ~ 432971 (-)
G454479 NA non-coding upstream 28058 556268 ~ 556919 (-)
G454525 NA non-coding upstream 83309 611519 ~ 612467 (-)
G454528 NA non-coding upstream 86153 614363 ~ 614572 (-)
G454538 NA non-coding upstream 97709 625919 ~ 626200 (-)
G454545 NA non-coding upstream 122006 650216 ~ 729367 (-)
G454663 NA other upstream 523258 1051468 ~ 1055895 (-)
G454686 NA other upstream 613032 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 808069 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 898573 1426176 ~ 1430654 (-)
G456317 NA other upstream 3115027 3643237 ~ 3648040 (-)

Expression


Co-expression Network