CI01000320_00388838_00393457 (NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA)


Basic Information

Item Value
gene id CI01000320_00388838_00393457
gene name NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 388507 ~ 393457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00388838_00393457.mRNA
TTCAAACCAGACCATCAACATGGGAAAGCAGAACAGCAAACTCCGTCCCGAGGTGATACAGGACCTGCTGGAAAACACAGACTTCACTGAGCATGAGATCCAGGAGTGGTACAAGGGCTTCCTGCGGGACTGCCCCAGCGGTGCGCTCAGCATGGACGAATTTAAGAAGATCTACGGCAACTTTTTCCCCTATGGAGACGCGTCAAAGTTTGCGGAGCACGTCTTCAGAACCTTCGACGCAAATGGAGATGGAACAATAGATTTCAGAGAGTTTATCATTGCCCTGAGCGTCACGTCACGCGGCCGTTTGGATCAGAAGCTAAAGTGGGCCTTCAGTATGTACGATCTGGATGGCAATGGATACATAAGCAAGGCGGAAATGCTCGAGATTGTACAGGCCATCTATAAGATGGTATCTGCAGTGATGAAGATGCCAGAGGACGAGTCCACGCCTGAGAAACGCACAGAGAAGATCTTCCGCCAGATGGACACAAATCGTGATGGTAAGCTGTCACTGGAAGAGTTTGTAGAGGGAGCAAAGAACGACCCATCCATTGTGCGACTGTTGCAGTGCGATCCCAGCAGTGCCGGCCAGTGAATCAACAGCATCTCGCTACTGTCATAACCTCTCATACACAAGTCTTTCTGTTCGGTCAGAGCCTGGACTCCAAAACTACACCCCCTATCTGTGCTGTCCTATCTGAGTGTCTGCGAGTTTCCCACTGAACACCAGGCATGGAAACCATTTCGGACGCCCATTTCGGCAACCATTTTTTTCCCCACAGACACACGTCAGGTAACGTTCAGAAACTGATATACAGAGGTCATGCACACTAAGCTTGTGTACATGCGTCTCTCTGTACTTTGAATTCCTCAGATAAGACTTTTACACAGTAACACAATGCAAGTACTTTTGGTACTGAAATAAA

Function

symbol description
ncaldb Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Is expressed in eye. Orthologous to human NCALD (neurocalcin delta).
ncalda Predicted to enable calcium ion binding activity. Orthologous to human NCALD (neurocalcin delta).
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).
ncald Enables actin binding activity; clathrin binding activity; and tubulin binding activity. Predicted to act upstream of or within calcium-mediated signaling and regulation of systemic arterial blood pressure. Predicted to be located in cytosol.

GO:

id name namespace
GO:0003073 regulation of systemic arterial blood pressure biological_process

KEGG:

id description
K19695 NCALD; neurocalcin delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00388838_00393457.mRNA True 929 mRNA 0.49 3 388507 393457

Neighbor

gene id symbol gene type direction distance location
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 39062 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 44728 331481 ~ 343779 (-)
CI01000320_00316109_00326335 PABPC1B, PABPC1, PABPC1A coding downstream 61673 315632 ~ 326834 (-)
CI01000320_00264815_00284889 RNF19A coding downstream 103290 264519 ~ 285217 (-)
CI01000320_00235265_00237642 NA coding downstream 150865 235265 ~ 237642 (-)
CI01000320_00420198_00423170 NA coding upstream 26506 419963 ~ 423170 (-)
CI01000320_00442550_00456381 PTPN2B coding upstream 48667 442124 ~ 456387 (-)
CI01000320_00586900_00592523 FAM210AA coding upstream 192536 585993 ~ 592523 (-)
CI01000320_00688829_00696138 NA coding upstream 295231 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 351573 745030 ~ 759106 (-)
G454414 NA non-coding downstream 76759 311484 ~ 311748 (-)
G454394 NA non-coding downstream 341492 46780 ~ 47015 (-)
G454387 NA non-coding downstream 351908 36399 ~ 36599 (-)
G454440 NA non-coding upstream 33766 427223 ~ 428081 (-)
G454442 NA non-coding upstream 38996 432453 ~ 432971 (-)
G454432 NA non-coding upstream 85612 479069 ~ 480597 (-)
G454445 NA non-coding upstream 87816 481273 ~ 481628 (-)
G454459 NA non-coding upstream 94770 488227 ~ 488473 (-)
G454495 NA other upstream 133602 527059 ~ 528552 (-)
G454663 NA other upstream 658011 1051468 ~ 1055895 (-)
G454686 NA other upstream 747785 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 942822 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 1033326 1426176 ~ 1430654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014629 ncaldb coding NC_007130.7 CM002903.2 12297100 ~ 12324514 (-)