CI01000320_00586900_00592523 (FAM210AA)


Basic Information

Item Value
gene id CI01000320_00586900_00592523
gene name FAM210AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 585993 ~ 592523 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00586900_00592523.mRNA
TCAGGCCCCTGTCAGACTGTCTGCTTGTTTTTATGCTGACAGACCCTTGGGAGAAGAAGCTTGTTTTGCGATGCAGCGGTTTGTGTGTGCTAGAGTCTTCAGGCAGACTGCTGCCCTGCTGCAGATTGGTCCTCCGTCCTGTAGCCGGACCGCTCAGAGACTGGATCCACCGACCCAGCGATGCTGGAAACAGCTGAGCTCCAGCCCACGATGGCTCAGCAGCTCCAGTGCACTCTGCTCTCCGGCCTCTCAGAAGGACACTAGCAGAGATCATCTAGTAAACTCAGCTCCAGGGCAGGATGATCCAGACCCTCTACAGGATAAATCCATCGGCCTCATTCAGAGATTCAAGAAAACCTTTAAGCAGTATGGCAAAGTCATGATCCCTGTGCACCTGTTGACGTCTACAGTGTGGTTCGGTACATTTTACTATGCTGCAATGAAAGGAGTGAATTTGGTGCCATTTCTTGAGTATGTTGGGTTTCCTGACAAGGTTGTGAAACTCCTGGAGAACTCTCAGAGTGGCTATGCTCTGACAGCATATGCCATGTACAAGATCGCCACACCTGCGAGGTACACGGTGACTCTAGGAGGAACATCACTGTCCGTGAAGTACCTGAGGAAGCACGGCTACATGTCCACCCCTCCGCCTGTGAAGGAATACCTCCAGGAGAAGATGGAGGAGACCAAAGAAAGGATCTCTGGAAAAATGGAGGAGACCAAGGATCGTTTTTCCGAGAGAATGGAGGAAACGAAAGACAAGTTCACTGAAAAACTTCAAGAAACCAAAGACAAAGTGTCTTTCCGAAAGAAAAAGGAATAGGTTTATACACTTACAAAAGGTCATGAAGTGACTTTATCTTCCCATAATGTCATGAAGATTCACGTTATTTAACAATATAATACACTTTAAGGAAAGCATATTTAAAATATAATGTAGGCTGTAAGCTGTACACTCACTGTTCACGTAATAGGCTAAACTATCACAAGATGTGGTGGTATTATAATTCATAAATTGACCATAGTTTCTGGATATAAAATATCACAGCACACAAAGTCTACTGAAAGATGTTGGACTTAACTTGAAGTACTTTTTAACGGATGAGAGTGTGTTTTCTAAAGAGAACAGCAGGTGTAATGTGCCCAATATCATATTTGTAATACTTTATTCCCTAAAAACATAGCACTGCCTCTTTCAATTCTTGCATATGTTTATAGTTAAATTATGGATTCAAAACAGTACAGAATTGTCACACAAGTTACTGAGAATGAAGTAGTCATGTTGTAAAATCTTGAAAAAATTGATTGTAACTTTAGATATTATGCAAAACAGTGTTTGTCATAAAGCTATAAATGTACGTTAAGATGTAATACAGCTTATACCGTTGCTTATAATATGGGAAATAGAAAAATAATCACAAATTGTCCTGACGGTCATTCTGCAGATCATCAACATTCTTTACATCCTGTTTCAAATTCAGTATGTTCCTGCCATATTCATGTGTTTCATTTATGCAACATCATTTTCAGTTGGTACTGTCACATATTTCTCAAAGTCCTATTTTTGCTTTCATTTTGCTTAGTAATTGATGAAGGTTAATAATTGAACTGATTATTCCACAGCAAATGTCTCTGCTGGTGAAGCACTAGGGCTGTTTAGGTTTGATTGGATTGCAAAGCCTTTTGTCTGTTGAAGGATGTTCCACCTGGCTGTCAACAGTAACAATAAA

Function

symbol description
fam210aa Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human FAM210A (family with sequence similarity 210 member A).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00586900_00592523.mRNA True 1730 mRNA 0.41 3 585993 592523

Neighbor

gene id symbol gene type direction distance location
CI01000320_00442550_00456381 PTPN2B coding downstream 129606 442124 ~ 456387 (-)
CI01000320_00420198_00423170 NA coding downstream 162823 419963 ~ 423170 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 192536 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 236548 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 242214 331481 ~ 343779 (-)
CI01000320_00688829_00696138 NA coding upstream 96165 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 152507 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 341909 934432 ~ 945755 (-)
CI01000320_01042859_01043564 NA coding upstream 449501 1042024 ~ 1043564 (-)
CI01000320_01176457_01181900 NA coding upstream 582212 1174735 ~ 1181900 (-)
G454479 NA non-coding downstream 29074 556268 ~ 556919 (-)
G454495 NA non-coding downstream 57783 527059 ~ 528552 (-)
G454460 NA non-coding downstream 97131 488541 ~ 488862 (-)
G454459 NA non-coding downstream 97520 488227 ~ 488473 (-)
G454445 NA non-coding downstream 104365 481273 ~ 481628 (-)
G454525 NA non-coding upstream 18996 611519 ~ 612467 (-)
G454528 NA non-coding upstream 21840 614363 ~ 614572 (-)
G454538 NA non-coding upstream 33396 625919 ~ 626200 (-)
G454545 NA non-coding upstream 57693 650216 ~ 729367 (-)
G454585 NA non-coding upstream 130008 722531 ~ 723677 (-)
G454663 NA other upstream 458945 1051468 ~ 1055895 (-)
G454686 NA other upstream 548719 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 743756 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 834260 1426176 ~ 1430654 (-)
G456317 NA other upstream 3050714 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location