CI01000320_00420198_00423170


Basic Information

Item Value
gene id CI01000320_00420198_00423170
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 419963 ~ 423170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00420198_00423170.mRNA
GTGGCTGTTAACCCTTGTTAACAACAGGGGTCCCAAAGTTCCAGAGATCATTGAGCTGCAGGACTGGCAGGACCAACCTGACCAATACATCATGGTCTTGGAGCGTCCCTCATCCTGCCAAGATCTGTGGAATTTTTGGGACAGTCATGAAGACATCCTTAATGAGGACACAGCACAGTTTATAATGACGCAAGAGACAATGGCCGCTCACATGTGCTTTCGCCGTGGAGTTTTCCACTGCATAAATGAGTACTGCCCACCTGAGTACTTCACAGATGGCAAGTACCACGGTAAACCAGCTACTGTGTGGTCTCTGGAAGTGCTCTTATTCTTGCTGGTGTGTGGACGCTTTCCAAAACGAGACAGGCAGATGATTGATGACGACATCTGGTCCGAGCCTGGATTGTCCAACGGGATATTCAGAAATATGGTGTTTCATAAATGACAATGTAAGAAATCAATACAGTCATCAGCCTCACCCAAAGGCTCTCATAAAGCGTTCAGTCCAGCAGAGAAATACAATAGCTACAAGCTAAACACTATAAAAATGTTTCTTTGAAATGTTTCTACTTTTATAACCAACAAGAGCAAGCTTATGAATTGCAGACATGCAAACTCAATGGTATGTCGTCTTTGGCTGTATTAAATATATGTGTCTACTGTCTTGTAGAGTTAATAAA

Function

NR:

description
hypothetical protein Z043_108878

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00420198_00423170.mRNA True 680 mRNA 0.43 3 419963 423170

Neighbor

gene id symbol gene type direction distance location
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 26506 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 70518 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 76184 331481 ~ 343779 (-)
CI01000320_00316109_00326335 PABPC1B, PABPC1, PABPC1A coding downstream 93129 315632 ~ 326834 (-)
CI01000320_00264815_00284889 RNF19A coding downstream 134746 264519 ~ 285217 (-)
CI01000320_00442550_00456381 PTPN2B coding upstream 18954 442124 ~ 456387 (-)
CI01000320_00586900_00592523 FAM210AA coding upstream 162823 585993 ~ 592523 (-)
CI01000320_00688829_00696138 NA coding upstream 265518 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 321860 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 511262 934432 ~ 945755 (-)
G454414 NA non-coding downstream 108215 311484 ~ 311748 (-)
G454394 NA non-coding downstream 372948 46780 ~ 47015 (-)
G454387 NA non-coding downstream 383364 36399 ~ 36599 (-)
G454440 NA non-coding upstream 4053 427223 ~ 428081 (-)
G454442 NA non-coding upstream 9283 432453 ~ 432971 (-)
G454432 NA non-coding upstream 55899 479069 ~ 480597 (-)
G454445 NA non-coding upstream 58103 481273 ~ 481628 (-)
G454459 NA non-coding upstream 65057 488227 ~ 488473 (-)
G454495 NA other upstream 103889 527059 ~ 528552 (-)
G454663 NA other upstream 628298 1051468 ~ 1055895 (-)
G454686 NA other upstream 718072 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 913109 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 1003613 1426176 ~ 1430654 (-)

Expression


Co-expression Network