CI01000320_00316109_00326335 (PABPC1B, PABPC1, PABPC1A)


Basic Information

Item Value
gene id CI01000320_00316109_00326335
gene name PABPC1B, PABPC1, PABPC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 315632 ~ 326834 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00316109_00326335.mRNA
CGAAACCCCCGGCTGTTAGTGCTGTGTGAGTGCGTGTGTGCTCCGGAGCTTGCCTCGGCACACATTATATAAAAAAAAAAAAAATACAAAAAAATTTAAAAACTTTTAAAAACTCCAAAAAATCCTTTTTTTCTTTTATAAATAAAAATTGGTGAAGTGGGAGCTGGAGACCTTGAAACATCGCAACAAATCTGAAAAAATAACGATATAACGTTATAGTCTGTGAGCTTGCAAAGGCCTAGCGGTTTGCTTGATTCGTTGGTTTGGATTTTTTCGCGTTTTAAATTTTTTGTTGCCCTTATTATTAGTCATTTTAAACGAAGCACCAAACGCTTTAATTGCTCCAGAAATAATCTTTTAGTCTACGGTTTTAAATTGTAAAAATTGGCGTGTTTAGATTAGCTTGACAGCTAACTATATTCTGACGTAGTTGATCTCACGCGCTAGTGCCGCGAAACAGGTAAAATTCTGCAAGTTCACAACTGCGACCGAAGAGAAAATGAACCCCAGCGCTCCTAGTTACCCCATGGCCTCGCTGTATGTTGGGGACCTGCACCAGGACGTGACTGAAGCCATGCTCTACGAGAAGTTCAGCCCGGCCGGTGCCATCCTCTCCATCCGCGTGTGCAGGGACATGATCACCCGCAGGTCGCTCGGCTATGCCTATGTCAACTTCCAGCAGCCTGCAGATGCTGAACGGGCTTTAGACACAATGAACTTTGACGTCATCAAGGGTAGACCTGTCCGCATCATGTGGTCTCAGCGTGACCCCTCTCTGAGGAAAAGCGGCGTTGGAAACATCTTTATTAAAAACTTGGATAAGTCTATTGATAACAAAGCCCTTTATGACACCTTCTCTGCTTTTGGCAACATCCTGTCATGCAAGGTGGTTTGTGATGAGAATGGCTCAAAGGGCTATGGCTTTGTGCACTTTGAGACCCAGGAGGCTGCTGAAAGAGCCATTGAGAAAATGAACGGCATGTTGCTGAATGACAGAAAAGTGTTTGTAGGGCGCTTCAAATCTCGCAAGGAGAGGGAGGCTGAGCTTGGTGCAAGAGCCAAAGAATTTACTAACGTGTACATTAAAAACTTTGGGGAAGATATGGATGATGACAAGCTCAAGGACATCTTCAGCAAATATGGTAATGCTATGAGCATCCGTGTCATGACTGATGAAAATGGGAAGTCCAGAGGCTTTGGATTTGTGAGTTTTGAGAGGCACGAAGATGCGCAAAGGGCTGTGGATGAGATGAATGGCAAAGAACTGAATGGGAAGCTCATCTATGTGGGTCGTGCTCAGAAAAAAGTGGAGCGCCAAACTGAGCTCAAGCGCAAATTTGAACAGATGAAGCAGGACCGCATGACTCGCTACCAGGGTGTTAATCTCTATGTTAAGAACTTGGATGATGGTATTGATGATGAGCGTCTTCGTAAAGAGTTCTCTCCCTTTGGAACAATCACCAGTGCCAAGGTCATGATGGACGGTGGTCGCAGTAAAGGCTTCGGTTTTGTCTGTTTCTCTTCCCCTGAGGAAGCCACTAAAGCAGTGACTGAGATGAATGGCCGTATTGTGGCTACTAAGCCACTGTATGTGGCTCTTGCTCAGCGCAAAGAGGAACGGCAGGCCCATCTTACCAACCAGTACATGCAGAGGATGGCCAGTGTCCGTGCAGTGCCAAACCCAGTTATCAACCCCTACCAACCTGCACCTCCATCAGGATACTTCATGGCTGCCATTCCGCAGGCCCAGAACAGAGCTGCATATTACCCTACTAGTCAGCTCGCCCAGCTCAGACCTAGTCCCCGCTGGACCACACAAGGAGTTCGGCCTCAGCACTTCCAAAACATGCCAGGCACAATGCGCCCATCTGCCCCTAGACCTCAGACCTTCAGCACCATGCGTCCTGCATCACAGGTGCCCCGCATGATGTCCACTCAGCGTGTTGCTGCTCAGACTATGGGTCCACGGCCCTCCACTGCAGCGGCTGCAGCTTCTGCCCCTCCAGTACGTGGCGTGCCTCAGTACAAATACGCACCCAGTGTCCGCAACCCTCAGCAGCACATGAACACACAGCCTCAGGTTACTATGCAGCAGCCTGCTGTGCATGTGCAAGGACAGGAACCACTGACGGCCTCCATGCTCGCCGCTGCTCCTCCACAGGAACAGAAGCAGATGCTGGGTGAGCGTCTCTTCCCACTTATCCAGAATATGCATCCCAGCCTGGCTGGCAAGATCACTGGTATGCTGCTGGAAATCGACAACTCTGAGCTCCTTCACATGCTGGAGTCTCCGGAGTCTCTGCGCTCCAAGGTTGACGAGGCGGTGGCCGTGCTCCAGGCTCACCAGGCTAAAGAAGCCGCTCAAAAAACTGTGACCAACTCTGCTGGTGTGCCAAGTGTTTAAGCCAAGGTAACATGTTCCTTTTATCATCTGTTTCTCTCCAATCGCATCAATTGTCTGTTGGAGAACTGAGGTCATGATGTCTCTGTTTTACAGGGGTGTGCAACCTTGAATCTTCACAGAGAGGAGGAAAAGTAAACATCGGAAAAAAAACTAAAACACAGAAAACATTGCAAAACATCTAAAACCGTATTTAAAAAAGAAACTAGAAAGAGCCAGGTCTAGAGACAAGCATTCTAGGCCTAGTTAAGGTATTTAAAAAAAAAAAAAAAAGAATAAAAAAGGAAAAAAAGACAAAAATTATGTTGGGGGTTTAAAAAAAAAATCCACAGTACAGGGAGTAAACAGCCGTAAAGCATTCCTGCCTTGTTTTATTTCTTTTAAAGCCTGGCTATGTCATGTTCTTAGAAGGGAGGTGAGAACTGACAGAACCAGCAATGTGATGTTCTCTTAAATTGACAATATGCTTGCTCAAATAAA

Function

symbol description
pabpc1a Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Acts upstream of or within heart development. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in several structures, including central nervous system; digestive system; eye; pectoral fin bud; and ventral mesenchyme. Orthologous to several human genes including PABPC1 (poly(A) binding protein cytoplasmic 1).
pabpc1b Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including alar plate midbrain region; nervous system; notochord; pronephric duct; and yolk syncytial layer. Orthologous to human PABPC1 (poly(A) binding protein cytoplasmic 1).
pabpc1 Enables RNA binding activity and protein C-terminus binding activity. Involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of viral genome replication. Located in several cellular components, including cell leading edge; cytoplasmic stress granule; and cytosol. Part of catalytic step 2 spliceosome.

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00316109_00326335.mRNA True 2881 mRNA 0.47 14 315632 326834

Neighbor

gene id symbol gene type direction distance location
CI01000320_00264815_00284889 RNF19A coding downstream 30415 264519 ~ 285217 (-)
CI01000320_00235265_00237642 NA coding downstream 77990 235265 ~ 237642 (-)
CI01000320_00229061_00235087 NA coding downstream 80545 228750 ~ 235087 (-)
CI01000320_00207493_00228007 CPSF1 coding downstream 87540 207311 ~ 228092 (-)
CI01000320_00163150_00192941 CTDP1 coding downstream 122691 163021 ~ 192941 (-)
CI01000320_00331521_00343779 YWHAZ coding upstream 4647 331481 ~ 343779 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding upstream 19397 346199 ~ 349445 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding upstream 61673 388507 ~ 393457 (-)
CI01000320_00420198_00423170 NA coding upstream 93129 419963 ~ 423170 (-)
CI01000320_00442550_00456381 PTPN2B coding upstream 115290 442124 ~ 456387 (-)
G454414 NA non-coding downstream 3884 311484 ~ 311748 (-)
G454394 NA non-coding downstream 268617 46780 ~ 47015 (-)
G454387 NA non-coding downstream 279033 36399 ~ 36599 (-)
G454440 NA non-coding upstream 100389 427223 ~ 428081 (-)
G454442 NA non-coding upstream 105619 432453 ~ 432971 (-)
G454432 NA non-coding upstream 152235 479069 ~ 480597 (-)
G454445 NA non-coding upstream 154439 481273 ~ 481628 (-)
G454459 NA non-coding upstream 161393 488227 ~ 488473 (-)
G454495 NA other upstream 200225 527059 ~ 528552 (-)
G454663 NA other upstream 724634 1051468 ~ 1055895 (-)
G454686 NA other upstream 814408 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 1009445 1336279 ~ 1343274 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002663 LOC103371419 coding CM030136.1 CM030136.1 25447921 ~ 25455774 (+)