CI01000320_00442550_00456381 (PTPN2B)


Basic Information

Item Value
gene id CI01000320_00442550_00456381
gene name PTPN2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 442124 ~ 456387 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_00442550_00456381.mRNA
AGAGATATGGAGCAGGAGTTTGAGGACATAGATTCAGAGGGCCGCTGGCAGAACCTTTATTTAGAAATACGCAACCAGTCACATGAGTGTGCCTTCAAAGTGGCCAAGTATCCAGAGAATCGCAATAGAAACAGATACAGAGATGTGAGCCCATTTGACCACAGTCGGGTGAAATTGGAAAACACAGAAAATGACTACATCAATGCCAGCCTGGTGGTAATGGAAGAAGCCCAGAGAAGATACATACTTACACAGGGTCCTCTGAGAAACACCTGTGGTCACTTTTGGCTGATGATCTGGGAGCAGAAGACCAAAGCCGTTATCATGCTCAACAGAGTAATAGAAAAAGGCTCGGAAAAGTGTGCACAATATTGGCCGACACAAGAAGAACGAGAAATGTCCTTCCGTGACACCCGCTTTGTGGTAACACTAGTGTCAGAGGACATCAAGTCATATTACACCACCAGAGTGCTGGAACTCCAGAACGCAAATACAGGAGAGACAAGAGAGATCTATCATTTTCATTATACCACATGGCCTGACTTTGGCGTCCCAGAATCCCCAGCCAGCTTTCTCAATTTTCTGTTTAAAGTGCGAGAGTCTGGCTCACTTGGGATGGACCATGGTCCAGCAGTGGTCCACTGCAGTGCAGGAATTGGGCGATCTGGAACATTCTCTCTGGTTGACACTTGTCTTGTCTTGATGGACAAGAGAAAAGACCCATTGGCAGTGGACATCAAAAAGATTCTTCTAGACATGAGGAAGTATCGAATGGGTTTGATTCAGACCCCCGACCAGCTGCGTTTCTCATACATGGCTGTGCTGGAAGGTGCAAAGTACATAATGGGAGACTCCTCTGTGCAGGCATGCCATTTTTTAACAGAATCACCATTAACTGGACCCTGGACTAGATTTACTGTGTTTGTGTTTATTGTGTTTATTATAGTTTTTTATGAATTTGTGCAGAAACAATGGCGAGAGCTCTCTAGAGAGGACCAAGAACCCCTATCTGAGTCTCCCCCACCGCCGCAGCCTCCTAAATGCACAGAACGCTACAATGGCAGCAAGCTGTCTCGTCTGGAGGATGGGATGGACTCAAAGACAGGAAAGAAAACAGGCCTAGAGACCCCCAATAAAGAACCAGACAGAGATGCTCGAACAATTGGTCACAAAAGACCAAGAGATGAGAAAATGTCCAACCCCATGCAGAAGACTCAGAAGCAGATAAAACCCAGGATCAACGACCCTGATAAGAAAAGAAAAAGCAGAAGCAGCTCAGTTTCACCAGTGCGGATCAGTGTACTGCTGTTCTTTTCTCTGTTTGAAATGGGGCATCTACCCAGGGAGAGATTTGAGCTGCGATTCCGTGTGCCTTTGTAATGTCTGTGTGTGCCAGAACTTACTGTAATTTGCGAGTTCAACTGGCATCACTGATAATACTATATTTTATTAATGATATCATAATGTAATATATCTAAATTACAATAGAATAATAAATTATATAGACATGTTGGTCAATATGATAGCAGATAATTATTTTGGAATATTTCTTGTGTACAAGTTTACAATATCCACCATCATAAATTACCCTAATTGGTGAGTATGACAGATCTCTGACAGAAGAGGGCAAGATTTCAGAATTGAGTAGGCTGGTGGGATGCTGATGTAATCAGACTGAGCTTGATAATTGGTCTGATGGCCTATTTAAAAAAAAAAATTGCATTCTGACATTTTCATGACAAGCAGATTTTCCCCTAAATGCTCATTATTGTAATACACTGTAATACAATGTTTTCATTTAATAAA

Function

symbol description
ptpn2b Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including EVL; anterior axial hypoblast; hatching gland; mesoderm; and vasculature. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K18026 PTPN2, PTPT; tyrosine-protein phosphatase non-receptor type 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_00442550_00456381.mRNA True 1806 mRNA 0.43 9 442124 456387

Neighbor

gene id symbol gene type direction distance location
CI01000320_00420198_00423170 NA coding downstream 18954 419963 ~ 423170 (-)
CI01000320_00388838_00393457 NCALDA, NCALDB, HPCAL1, NCALD, HPCAL1.L, HPCA.S, NCALD.L, HPCA coding downstream 48667 388507 ~ 393457 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 coding downstream 92679 346199 ~ 349445 (-)
CI01000320_00331521_00343779 YWHAZ coding downstream 98345 331481 ~ 343779 (-)
CI01000320_00316109_00326335 PABPC1B, PABPC1, PABPC1A coding downstream 115290 315632 ~ 326834 (-)
CI01000320_00586900_00592523 FAM210AA coding upstream 129606 585993 ~ 592523 (-)
CI01000320_00688829_00696138 NA coding upstream 232301 688688 ~ 696188 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding upstream 288643 745030 ~ 759106 (-)
CI01000320_00935826_00945755 LRP12 coding upstream 478045 934432 ~ 945755 (-)
CI01000320_01042859_01043564 NA coding upstream 585637 1042024 ~ 1043564 (-)
G454442 NA non-coding downstream 9153 432453 ~ 432971 (-)
G454440 NA non-coding downstream 14043 427223 ~ 428081 (-)
G454414 NA non-coding downstream 130376 311484 ~ 311748 (-)
G454394 NA non-coding downstream 395109 46780 ~ 47015 (-)
G454387 NA non-coding downstream 405525 36399 ~ 36599 (-)
G454432 NA non-coding upstream 22682 479069 ~ 480597 (-)
G454445 NA non-coding upstream 24886 481273 ~ 481628 (-)
G454459 NA non-coding upstream 31840 488227 ~ 488473 (-)
G454460 NA non-coding upstream 32154 488541 ~ 488862 (-)
G454495 NA non-coding upstream 70890 527059 ~ 528552 (-)
G454663 NA other upstream 595081 1051468 ~ 1055895 (-)
G454686 NA other upstream 684855 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 879892 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 970396 1426176 ~ 1430654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location