CI01000320_01426753_01430603


Basic Information

Item Value
gene id CI01000320_01426753_01430603
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1426176 ~ 1430654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_01426753_01430603.mRNA
ATTCACACAATGACAACAGCTTCACATTAGATAGGCATTACGTGAGAGGAAATGAAAAAATACTTTAGCAAACAACATCCTCATGGAATTCTCTTCAGCATCCTAAGCCGTAAGTGTGACTTTAAACACTTCAGTTATCCAAAGACACACAGCTGTCACTGTGAGCGATTAGTGTGCTTGAAAAACCCACATACCACCTGTCATGCTGCCTTTGGTGTCTTAGTAAAAACGATTCACTTCATGAAGAGCTTACCTTCCTTTCAAAATCTGCCGCTCAATGACCGACTCGTCCTTCTTCAGAACCGCTGGGTGCCTCTTTTCCTCCTGGGACTTGCGCAGGAGCACATCACTTTTGAGGTGTGGGACTTCCCTGCTGTCAGCATCCTTAGAAACATATTGTTGAATGGTCAGCAGAAATCAGATGACTGTCCGCCCACCCTGGCAGAAGTGTACAAACTTAAGATGTTCCTGAACAAAGTATGGAGTCTCGACCTGAGTCTAAATGAGTATGCATATCTCAAGTGTGCAATACTGTTCAGTCAAGATATTCCTGGCCTGAAGAGTTTGGCAGTGACAGCAGGACTGCAGGAGGAGGCCCACAGAGCTCTGCACATGCTTATTCTCTCCCAACATCATCCCAGAGATCACCATACATTCAAGGACATGCTGTTTATGGCTAGCACTCTACAGATAGAGGCCCGAAGCCTGGTGACAGAACTGTTTTTCAGACCTATCACTGGCCAGACAGATCTCCAGGAACTCCTAAATGAGATTATCGTCACCAATAGAATAATGTAGGATTATAAGTATACAATCGAGTACAACACTTGTGTGTCATTTTTGCAAAGATGTATTATTAACCTTTTACATTATATATATATATATATATATATATATATAGATATAATAAAAGCACAAAGTCATACAAAGAGAGTTGTTGTTTTTGCTTCTTAAAATCATATAAAACTAAAATTGCATTTTGACAGCGATCCATGCTCATATCTTGTATATTTGTCTCCACCTATTGGTTGTTCCTCTCATGGCACAAGTTGACATACACAGGTCAAAAGTCTTTGGCTGTGTTTGAGATGGAACCTACTATTTGAGGAAAAAAATAGTATGTGAAAGTGTAACATTGCCTTCAAGGTCAAGTATGAGTCTGGATCTAATTGCAGATAAAAAAGTGTTTAATGGCTCAAAACATGATACATATCCATGACTTGACCGTGGAACACATGACATGAAACGTAGCTTGTGGCCTTGATCTGCAAAAGGACTACAAAAAGGACATGAACTAATGAATGGCAAATTTCAAAATAAGAGACATGATGAAGTACAGAATCCTGACAAAACAGTATGCACATACAACAATAAA
>TU522089
TTCACACAATGACAACAGCTTCACATTAGATAGGCATTACGTGAGAGGAAATGAAAAAATACTTTAGCAAACAACATCCTCATGGAATTCTCTTCAGCATCCTAAGCCAACCGCTGGGTGCCTCTTTTCCTCCTGGGACTTGCGCAGGAGCACATCACTTTTGAGGTGTGGGACTTCCCTGCTGTCAGCATCCTTAGAAACATATTGTTGAATGGTCAGCAGAAATCAGATGACTGTCCGCCCACCCTGGCAGAAGTGTACAAACTTAAGATGTTCCTGAACAAAGTATGGAGTCTCGACCTGAGTCTAAATGAGTATGCATATCTCAAGTGTGCAATACTGTTCAGTCAAGATATTCCTGGCCTGAAGAGTTTGGCAGTGACAGCAGGACTGCAGGAGGAGGCCCACAGAGCTCTGCACATGCTTATTCTCTCCCAACATCATCCCAGAGATCACCATACATTCAAGGACATGCTGTTTATGGCTAGCACTCTACAGATAGAGGCCCGAAGCCTGGTGACAGAACTGTTTTTCAGACCTATCACTGGCCAGACAGATCTCCAGGAACTCCTAAAT
>TU522090
TTCACACAATGACAACAGCTTCACATTAGATAGGCATTACGTGAGAGGAAATGAAAAAATACTTTAGCAAACAACATCCTCATGGAATTCTCTTCAGCATCCTAAGCCGTAAGTGTGACTTTAAACACTTCAGTTATCCAAAGACACACAGCTGTCACTGTGAGCGATTAGTGTGCTTGAAAAACCCACATACCACCTGTCATGCTGCCTTTGGTGTCTTAGTAAAAACGATTCACTTCATGAAGAGCTTACCTTCCTTTCAAAATCTGCCGCTCAATGACCGACTCGTCCTTCTTCAGAACCGCTGGGTGCCTCTTTTCCTCCTGGGACTTGCGCAGGAGCACATCACTTTTGAGGTGTGGGACTTCCCTGCTGTCAGCATCCTTAGAAACATATTGTTGAATGGTCAGCAGAAATCAGATGACTGTCCGCCCACCCTGGCAGAAGTGTACAAACTTAAGATGTTCCTGAACAAAGTATGGAGTCTCGACCTGAGTCTAAATGAGTATGCATATCTCAAGTGTGCAATACTGTTCAGTCAAGATATTCCTGGCCTGAAGAGTTTGGCAGTGACAGCAGGACTGCAGGAGGAGGCCCACAGAGCTCTGCACATGCTTATTCTCTCCCAACATCATCCCAGAGATCACCATACATTCAAGGACATGCTGTTTATGGCTAGCACTCTACAGATAGAGGCCCGAAGCCTGGTGACAGAACTGTTTTTCAGACCTATCACTGGCCAGACAGATCTCCAGGAACTCCTAAAT
>TU522091
TTCACACAATGACAACAGCTTCACATTAGATAGGCATTACGTGAGAGGAAATGAAAAAATACTTTAGCAAACAACATCCTCATGGAATTCTCTTCAGCATCCTAAGCCATATTCCTGGCCTGAAGAGTTTGGCAGTGACAGCAGGACTGCAGGAGGAGGCCCACAGAGCTCTGCACATGCTTATTCTCTCCCAACATCATCCCAGAGATCACCATACATTCAAGGACATGCTGTTTATGGCTAGCACTCTACAGATAGAGGCCCGAAGCCTGGTGACAGAACTGTTTTTCAGACCTATCACTGGCCAGACAGATCTCCAGGAACTCCTAAAT

Function

NR:

description
Nr0b2a protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_01426753_01430603.mRNA False 1375 mRNA 0.40 2 1426176 1430654
TU522089 False 576 TUCP 0.46 3 1426783 1430653
TU522090 False 767 TUCP 0.46 2 1426783 1430653
TU522091 True 332 TUCP 0.46 2 1426783 1430653

Neighbor

gene id symbol gene type direction distance location
CI01000320_01394827_01394991 NA coding downstream 30077 1394798 ~ 1396099 (-)
CI01000320_01345762_01346867 NA coding downstream 79309 1345662 ~ 1346867 (-)
CI01000320_01338270_01341123 SH3BGRL3 coding downstream 82902 1336279 ~ 1343274 (-)
CI01000320_01328278_01333798 NA coding downstream 92378 1328250 ~ 1333798 (-)
CI01000320_01322036_01325638 NA coding downstream 100538 1321786 ~ 1325638 (-)
CI01000320_01453536_01456193 ME-T, NTL, TA coding upstream 22502 1453156 ~ 1456277 (-)
CI01000320_01719471_01731780 NA coding upstream 288652 1719306 ~ 1731876 (-)
CI01000320_01896359_01898516 NA coding upstream 465170 1895824 ~ 1898516 (-)
CI01000320_01914015_01916289 NA coding upstream 482650 1913304 ~ 1916289 (-)
CI01000320_01996579_02046284 NA coding upstream 565704 1996358 ~ 2046284 (-)
G454722 NA non-coding downstream 29562 1396382 ~ 1396614 (-)
G454707 NA non-coding downstream 38950 1362758 ~ 1387226 (-)
G454711 NA non-coding downstream 48388 1366261 ~ 1377788 (-)
G454682 NA non-coding downstream 297529 1128325 ~ 1128647 (-)
G454680 NA non-coding downstream 300516 1124882 ~ 1125660 (-)
G454721 NA non-coding upstream 4186 1434840 ~ 1441993 (-)
G454733 NA non-coding upstream 11490 1442144 ~ 1442443 (-)
G454738 NA non-coding upstream 27090 1457744 ~ 1462005 (-)
G454760 NA non-coding upstream 92256 1522910 ~ 1523116 (-)
G454761 NA non-coding upstream 93833 1524487 ~ 1524770 (-)
G454686 NA other downstream 284296 1141242 ~ 1141880 (-)
G454663 NA other downstream 370281 1051468 ~ 1055895 (-)
G454495 NA other downstream 897624 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 1075974 346199 ~ 349445 (-)
G456317 NA other upstream 2212583 3643237 ~ 3648040 (-)

Expression


Co-expression Network