CI01000320_01914015_01916289


Basic Information

Item Value
gene id CI01000320_01914015_01916289
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1913304 ~ 1916289 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_01914015_01916289.mRNA
ATGGCTCTGAAGCTTGAGAGAGGGAGGAAGTATAAAGTCAAAGACTTCCTTGAACACTTTGTAAATGGAGAGTTATCCGATCTTGACTGCTTGAATTCAGGAAATGAGGCAGATGAAAACGAGAGACGAGGGACAGAGATAAGGGACAGTGGAGTTGCATGCATGCTTGAAGAACTTGAGGTGGCAGCTGAGGTTGAGGTAGAAGAAAGTGTAGTGACAGAGGATCAGGAGGAGATTACAGTGAACAGAGAGGAAGATGATCATGAGCAGATGACAATAACCAGGAAGCATGAGATTAAGTGGTGCCATAGGCCATTCACCACAATCATCGATACTTCCTTTCAGAATCATCTGATTTGTGACAGACATCCCATGAGCCCATACGAATACTTCAAACAGTATGTACCAGATGCGCTCTTCGATCTGATGTCTGACAGCACCAACATCTATGCCATGCAAAGTGGCATACTAGGTTTCAAACCCACCAATTCAGGGGAAATCAGAACCCTCATTGGTCTCCACCTTGCTATGGGCGTGACGAAAATGGCAAGAGTCTCCATGTACTGGGAAGCCGGGATGGACATTGGTATTTTTCGAAACACCATGTGCCTTAACAGATTCTTCCAACTTCGGTCACATTTGCATTTGGTCAACAATTTGGAGAGGCTGGCAGAAAACAATGATGTGTTTTATAAGGTCCCACACAGCAGGAGACTCCTAGGCGGATCCGCATTCAAGTCGCCAAACCCACGTGACTGTCACATTTGTTTTGGTGCCGCCCAGAGGATCAGCTCCACCTCCGGGCAGCGCCATCCGTCACTGCGTGCAAGTGGACGCCGATACGGGTCCGTTCGCGGAAACGTTCCGGAAGCCGCGATACCTCCGCAGCCGATCCGCCGCGGAATACTTTTGCTGTGTGGGGTACGTCCTCTCTATGATGCCATGCGCAGAAGATGCTTAGAGCTTCCACTAGAGGAAAACCTTTGTGTTGATAAACAAATGGTGCCATTTTGTGGATCTCTCTCTGTCAAGCATTACGAAAAAGGCAAGCCACACCCTTGGGGGGTGAAAATATACTTCCTGTGTGGGAAAAGTGGCATGGCCTATGATTTCCTGCTGCACCAAGGAGCTACAATGGAAGTGTCAAAGCAGTTTAAGATGCAGCTAGGACTTGGAGCAGGAGTGGTGTACCATCTCAGCCAGCGCATTACAGAGGCCAACCACAAGTTGTATTTTGACAATTATTTCACGACATACAATCTTCTGGAGCTGTTGGCTGAGAAGAAAATTCATGCTGCTGGAACAGCAAGGGTCTGTCGCTTTGCCAACCCTCCTCTACAGTCTGACAAAGTGATGGCAAAAATGCCACGAGGAAGCTGCGATGAAGCTGTAAGCTGTGATGGTAAGGTCGCACTGGTCAAATGGTTTGACAGCAGATCAATCGTCATGGCCTCCAACTTTGTTGTTGTCAGCACAATGGATGAAGTGCAGCTGTGGGATAAAAAGCAGGGAAGATTTTTGAAGGTGTCCTGTCCGGAGGTGGTCAAGCTGTACAATAAAGCAATGGGAGGTGTTGACCTGCTCAATCAACTTGTTAGTCTGTACCGAAATTCGGAAATTCAGAAATTACAGAAATTCGGTCAAGAAAGTGGACCCTGAGAATGATTACACATGCTTTTGATCTAGCTTTGGTCAACAGTTGGTTAGACTACAGGCTGGATGCCAATCTCCAGACAAAAGACACCCTGGACCTCCATTTCAAGATGAATGTGGCCCAGTGTCTGGTGAGTGTCCATAAACCAGTGGCAGCAAAACGTGGAAGACCCAGTATGTCTCCAGAACCACAACCGCATGCCCACAGACCACGAGTTCAGGATGCAAGGCATCTACCTGAAGTGCAGTATGATATGGTTGACCACATGCCGAATTATGATGAGAAGACAGAGGCCACCAGATGCAAGAGGCCATACTGCACAGGGAAAACACATGTATTCTGTGACAATTGCAACATCCACCTTTGCTTTGTGCCACACAGAAACTGCTTCAAGGCTTCTCATCGCAATTGAGAGAATATATGGGAAAATCCAGCAGGTATATTTTTGTTAATTTCCATTTGTTAGTAATTGTGTGATCTCTTATTAGCTTACAATGTTAAAAGTTAGCAATGCGTTTGGAAGTATAACTGAATATTGATAACTGAATGCAAAACTGATTTTTTTGGGGGTTACATTGCCCACAATCATCCAACCCATTCAATCCGCTAACCTCCTTTGTTGAAAACATGGCTTTTTTTAATCTAAGATTTCGTGGCATTTTACGTTCATTTAGTCGTGGCGTCCATTGTAATGGACATTATAAAATACCAATAAA
>TU523092
AGATGCAAGAGGCCATACTGCACAGGGAAAACACATGTATTCTGTGACAATTGCAACATCCACCTTTGCTTTGTGCCACACAGAAACTGCTTCAAGGCTTCTCATCGCAATTGAGAGAATATATGGGAAAATCCAGCAGGTATATTTTTGTTAATTTCCATTTGTTAGTAATTGTGTGATCTCTTATTAGCTTACAATGTTAAAAGTTAGCAATGCGTTTGGAAGTATAACTGAATATTGATAACTGAATGCAAAACTGATTTTTTTGGGGGTTACATTGCCCACAATCATCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_01914015_01916289.mRNA False 2370 mRNA 0.46 4 1913304 1916289
TU523092 True 296 lncRNA 0.37 1 1913426 1913721

Neighbor

gene id symbol gene type direction distance location
CI01000320_01896359_01898516 NA coding downstream 14788 1895824 ~ 1898516 (-)
CI01000320_01719471_01731780 NA coding downstream 181428 1719306 ~ 1731876 (-)
CI01000320_01453536_01456193 ME-T, NTL, TA coding downstream 457027 1453156 ~ 1456277 (-)
CI01000320_01426753_01430603 NA coding downstream 482650 1426176 ~ 1430654 (-)
CI01000320_01394827_01394991 NA coding downstream 517205 1394798 ~ 1396099 (-)
CI01000320_01996579_02046284 NA coding upstream 80069 1996358 ~ 2046284 (-)
CI01000320_02054421_02068560 PHACTR4A coding upstream 138122 2054411 ~ 2068560 (-)
CI01000320_02151521_02154094 EDN2 coding upstream 234953 2151242 ~ 2154201 (-)
CI01000320_02165761_02186455 HIVEP3A coding upstream 249472 2165761 ~ 2186455 (-)
CI01000320_02201385_02204409 NA coding upstream 284835 2201124 ~ 2205644 (-)
G455628 NA non-coding downstream 5026 1907962 ~ 1908278 (-)
G455624 NA non-coding downstream 10412 1902673 ~ 1902892 (-)
G455623 NA non-coding downstream 10923 1899602 ~ 1902381 (-)
G454968 NA non-coding downstream 22920 1890157 ~ 1890384 (-)
G454967 NA non-coding downstream 23373 1889414 ~ 1889931 (-)
G455642 NA non-coding upstream 4091 1920380 ~ 1920597 (-)
G455656 NA non-coding upstream 17660 1933949 ~ 1934242 (-)
G455661 NA non-coding upstream 29843 1946132 ~ 1946360 (-)
G455663 NA non-coding upstream 33568 1949857 ~ 1951294 (-)
G455676 NA non-coding upstream 64457 1980746 ~ 1981056 (-)
CI01000320_01338270_01341123 SH3BGRL3 other downstream 572088 1336279 ~ 1343274 (-)
G454686 NA other downstream 771424 1141242 ~ 1141880 (-)
G454663 NA other downstream 857409 1051468 ~ 1055895 (-)
G454495 NA other downstream 1384752 527059 ~ 528552 (-)
G456317 NA other upstream 1726948 3643237 ~ 3648040 (-)

Expression


Co-expression Network