CI01000320_02054421_02068560 (PHACTR4A)


Basic Information

Item Value
gene id CI01000320_02054421_02068560
gene name PHACTR4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 2054411 ~ 2068560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_02054421_02068560.mRNA
ATGATGAAGTCGATCATAGTATGCCAGAGAGTGATGGAGCACATCCAGGAGCAGGAACCCCTTCAGCTAAGGGCAAGGGCAAGTTCTCCAACCTGGGCAAGATCTTCAAACCCTGGAAGTGGAGAAAGAAGAGAAGCAGTGAAAAGTTCAAGGAAACATCAGAAGTGCTGGAGAGAAAGATTTCGATGAGGAAACCCAGGGAGGAGCTGATAGAGCGAGGGTTACTGAAAGACATCCCAGAGAATGAGAGTAATGACGTGAATCATAAAGCCCCTCCAGTAAAGAATGGCCACACTGCTCCACTGCCTGGAGAACGCAGGTCAGATGCAGGAGTGGAAATCAAGGCACCATCTTCACGGCCACAGGGAGAAGAACAGAGGAATAGCCTCGTACCTGAACCGGAGCGCCGCAACAGAGCACCTTCCGATGTCAGTCGCAACCGTCAGCCACTGGATGTGGATGCTCGAACACGGTTACCGCCTGAAACGGACCGACGCAGCCGACTAGAGTCAGACTTGGAAAAACGTGCTGGATCGTTACCAAGAGAGAGACCAGGACAGGAGGAGGGACGATATCGGCGGGACGAACGAGACGAGAAAACGAATAGGGACAGAGAACGACGGGATAGAAAAGACGACAGGGAAGTAAAGGCTGAACGTAGAGATGATAGAGACAGACGAGATAGGAAGCCGGATAAAGAGGACTGGCATGGAAGAGAACAGGACATGCGGCCCAATCTTCAGAAGAGCTCGTCTGACATCGGACTGAAGGCCCGGCCAGTATCGGAGGCCGTCCAGAGCAGCACACTGCCACGATACTCACCTGCAGAGGAAGAATCAAGGGCACGAACAGCGTCAACATTACAAAGATATTACAAAACTCCACCTCCTCAGTACTGGACAAGTTGGAGACAGCAGGGAGAGTTTGGAGTCTATCTTTCCCTGCCCACCTACCTCAGCCAAAGGGTCACTCAGCTCCGCCCAGTGGATTCCTCTCAAGTCCCGGTTCCAGTCAAGCGATCTCCTCCCGTTCCCCCAAAGAGGATGACTCCTGTGACCAAACGCCACTCGGACGACTCCTCAGCCAATCAGCCTGAGCCTCCTCCCCCAGGCCCTACCTCTGTCCCAGCCCCTGCGTCTGCCCCGCCTCCTGCCCAATCAGATGACAGCAGAAACTCAAACTCTGAAGTATTCACTCCTCCACCAACCCATATCCCGCCATCCCCTCCTCACTCCCATCCAATTCCTGAAGTCCCCCAAGTGGACCCACCCAGCCCCACCACAGAACCACCCTCCCAGCCGCCCTTACCTCTGCACATTCGCATCCAGAGAGCCTTAAACAGTCCAGGCCCAGTCCAGCCCAACCCAGAAGGATCCCAGCGAGCTCACTCACTTCTCTTTGAATTACCTCCAGACTTTCTCGCTGAGGCTCCAGGAGGGGGGCGATACTCACTTCCTGTCACTATCGAACCTCTGCGACTGCCTGAGGATGATGATTTTGACATTGAAGAAGAGCTACAGAAGCTGCGTCCTGCCCCTCGGCCCACACGACAGCCGGAACTGGAGCCACGCAGCCGACGCGGTCTGGTGGGAGACCCACGAGTCACAGTCATTCCTGAGGATGCAGGACCTGGAAACAGTGAGGACGAGGAGGAGAGCGATTCTGACGGACCCATCCATTACAGAGATGATGATGAGGAAGATGATGATGAGGAGGATATTCCCACAAGTGGTCTTGCGAGTCGTGTGAAGCGAAAGGATACTCTGGCACTAAAGCTGGAGCGTCAGCAGGAGAAAGAGCAGTCTCAGGAACAGGACGACACCACCTGGACCAACAAAGAGCAGTGGGAAGCTCTCCGCAACAAGATCGGCACCACCCTCACAAGGAGGTTGAGTCAGAGACCCACAGCACAAGAACTTGAGCAGAGAAATATCCTACTAGCCAAGAATGAAGCGGACCGACGGGCAGAAAGGAGCGAAATCAAGCGCAGGCTGACCAGAAAGTTGTCACAGAGGCCCACGGTAGCTGAGCTCCAGGCCAGAAAAATCCTGCGTTTCCATGAGTATGTGGAGTGCACTCATGCTCAAGACTATGACCGGCGTGCTGACAAACCCTGGACCAAACTTACACCTGCTGACAAGGCGGCCATAAGAAAAGAGTTGAATGAGTATAAGAGCTCAGAAATGGAAGTTCATGAGGACAGCAGGATATACACCAGGTCTGACACTTTCAACACTTTTTTGTAATTGGAATAAA

Function

symbol description
phactr4a Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase activator activity. Predicted to be involved in several processes, including enteric nervous system development; morphogenesis of embryonic epithelium; and negative regulation of integrin-mediated signaling pathway. Predicted to act upstream of or within nervous system development. Predicted to be located in lamellipodium. Orthologous to human PHACTR4 (phosphatase and actin regulator 4).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_02054421_02068560.mRNA True 2256 mRNA 0.54 12 2054411 2068560

Neighbor

gene id symbol gene type direction distance location
CI01000320_01996579_02046284 NA coding downstream 8127 1996358 ~ 2046284 (-)
CI01000320_01914015_01916289 NA coding downstream 138122 1913304 ~ 1916289 (-)
CI01000320_01896359_01898516 NA coding downstream 155895 1895824 ~ 1898516 (-)
CI01000320_01719471_01731780 NA coding downstream 322535 1719306 ~ 1731876 (-)
CI01000320_01453536_01456193 ME-T, NTL, TA coding downstream 598134 1453156 ~ 1456277 (-)
CI01000320_02151521_02154094 EDN2 coding upstream 82682 2151242 ~ 2154201 (-)
CI01000320_02165761_02186455 HIVEP3A coding upstream 97201 2165761 ~ 2186455 (-)
CI01000320_02201385_02204409 NA coding upstream 132564 2201124 ~ 2205644 (-)
CI01000320_02224076_02235673 SERINC2L, SERINC3, SERINC2 coding upstream 154909 2223469 ~ 2235673 (-)
CI01000320_02408906_02419474 NA coding upstream 340318 2408878 ~ 2419527 (-)
G455676 NA non-coding downstream 73355 1980746 ~ 1981056 (-)
G455663 NA non-coding downstream 103117 1949857 ~ 1951294 (-)
G455661 NA non-coding downstream 108051 1946132 ~ 1946360 (-)
G455656 NA non-coding downstream 120169 1933949 ~ 1934242 (-)
G455642 NA non-coding downstream 133814 1920380 ~ 1920597 (-)
G455714 NA non-coding upstream 61854 2130414 ~ 2130646 (-)
G455720 NA non-coding upstream 137226 2205786 ~ 2262847 (-)
G455765 NA non-coding upstream 252958 2321518 ~ 2321728 (-)
G455773 NA non-coding upstream 260135 2328695 ~ 2329027 (-)
G455774 NA non-coding upstream 265853 2334413 ~ 2334671 (-)
CI01000320_01426753_01430603 NA other downstream 623758 1426176 ~ 1430654 (-)
CI01000320_01338270_01341123 SH3BGRL3 other downstream 713195 1336279 ~ 1343274 (-)
G454686 NA other downstream 912531 1141242 ~ 1141880 (-)
G454663 NA other downstream 998516 1051468 ~ 1055895 (-)
G454495 NA other downstream 1525859 527059 ~ 528552 (-)
G456317 NA other upstream 1574677 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021091 LOC106603306 coding CM030130.1 CM030130.1 3255379 ~ 3265211 (-)