G454663


Basic Information

Item Value
gene id G454663
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1051468 ~ 1055895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU522002
GAGAAAAAAAAAAATTTTTTTTTGAAGTGGACTTAGGAACGAGACCTTGAGTGGGATCGAGATCGGGAATACGATTTTGAGCGTGAATGTGAGCGAGATTTGGATCTGGATCTAGATTCCCTGCGCCGATCAGCATCTGGTGGCGTTTGTGATCTGGATCGAGAATGAGCTCTAGAACGGTGCACCCGTTCAGCCACTCTGCCTTCATCACTGCTCTTGGTTGCCTCCTGAGATTTGGACCCAGACTCCCTGGAGAGATCCCTGTTGTTGCCCGATTTGGACCGAGATCTGGATCGAGAATAGGAGCGACCCCTCTTGTTCTCCCGTTTACTCTTTTTGTTTTGGGGGCTGCAGCTCAAGCTATTATCCCTTGCGCTTTCACCTCCTCTGCGAGCTCCATTACTGCTCTCCTCCATCCTACTGCTCCTGCCCTTCGTCTTCTTGCTGGTTGACCTGCTGCGTGATCGTGAGCCTGAGGGTCTTGAGCGGCTACTGGTTCGACTGTGGCTTCGGCTCCTGCGAGACCTCCTGCTCCTGGAGCGAGACCTGGAGGCGCTGCGAGAATAGGAGCGTCTGCGTCTGGCACCAGGTCGGTCCTCAATGAGACGAATTTTCCTTCCATTGACCTCAGTGCCGTCAAGTTTCTCCAGGGCTCTTTTCATGTCTGAGTACTGCCTGAACTCTATGACCCCCTCATTCTTGCGGCCCTTATTAGTGTCTGCATAAGTTACCTCACCAGCCTGACGCATGTAGTCCTTCAGGTCCTGCCAGCTGCAGCGACTAGACAGATTTTCCACAATCAGCCTGTAATCCGTGCGTGTAGGTGGGCCGTACCTGTCCCCTCCTCCACGCCCATAACGATTACTTCTTCCAGATCGGTTTCCTCCATCACGGCGCTGTCCTATGGTATGCTCCACTATCACTCTCTTCCCACAAAGATCTTTGCCGTTCAAATCGTACACAGCATCATCTGCATCACGGGGGTCATCAAACTCTACAAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU522002 True 1004 TUCP 0.52 5 1051468 1055895

Neighbor

gene id symbol gene type direction distance location
CI01000320_01042859_01043564 NA coding downstream 7904 1042024 ~ 1043564 (-)
CI01000320_00935826_00945755 LRP12 coding downstream 105713 934432 ~ 945755 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding downstream 292362 745030 ~ 759106 (-)
CI01000320_00688829_00696138 NA coding downstream 355280 688688 ~ 696188 (-)
CI01000320_00586900_00592523 FAM210AA coding downstream 458945 585993 ~ 592523 (-)
CI01000320_01176457_01181900 NA coding upstream 118840 1174735 ~ 1181900 (-)
CI01000320_01207179_01217428 EPB41 coding upstream 151284 1207179 ~ 1217438 (-)
CI01000320_01263151_01266426 CTGFB coding upstream 207144 1263039 ~ 1266426 (-)
CI01000320_01310476_01318751 STX12 coding upstream 254449 1310344 ~ 1318751 (-)
CI01000320_01322036_01325638 NA coding upstream 265891 1321786 ~ 1325638 (-)
G454656 NA non-coding downstream 41567 1009652 ~ 1009901 (-)
G454654 NA non-coding downstream 45276 1005965 ~ 1006192 (-)
G454653 NA non-coding downstream 45869 1005200 ~ 1005599 (-)
G454652 NA non-coding downstream 46335 1004823 ~ 1005133 (-)
G454651 NA non-coding downstream 46959 1004290 ~ 1004509 (-)
G454677 NA non-coding upstream 52640 1108535 ~ 1108839 (-)
G454680 NA non-coding upstream 68987 1124882 ~ 1125660 (-)
G454682 NA non-coding upstream 72430 1128325 ~ 1128647 (-)
G454707 NA non-coding upstream 306863 1362758 ~ 1387226 (-)
G454711 NA non-coding upstream 310366 1366261 ~ 1377788 (-)
G454495 NA other downstream 522916 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 701266 346199 ~ 349445 (-)
G454686 NA other upstream 85347 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 280384 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 370888 1426176 ~ 1430654 (-)
G456317 NA other upstream 2587342 3643237 ~ 3648040 (-)

Expression


Co-expression Network