G454682


Basic Information

Item Value
gene id G454682
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1128325 ~ 1128647 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU522021
TCTTGCTGGAAGGTGAACCTCCGCCCCAGTCTCAAGTCTTTTGCAGACTCTAACAGGTTTTCATCTAAGATTGCCCTGTATTTGGCTCCATCCATCTTCCCATCAACTCTGACCAGCTTCCCTGTCCCTGCTGAAGAAAAGCATCCCCACATGTTTCACAGTGGGGATGGTGTGTTCAGGGTGATGTGCAGTGTTAGGTTTCCGCCACACATACCGTTTTGCATTTAGGCCAAAAAGTTCAATTTTGGTCTCATCTGACCAGAGCACCTTCTTCCACATGCTTGCTGTGTCCCCCACATGGCTTGTCGCAAACTGCAAACGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU522021 True 323 lncRNA 0.50 1 1128325 1128647

Neighbor

gene id symbol gene type direction distance location
CI01000320_01042859_01043564 NA coding downstream 84761 1042024 ~ 1043564 (-)
CI01000320_00935826_00945755 LRP12 coding downstream 182570 934432 ~ 945755 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding downstream 369219 745030 ~ 759106 (-)
CI01000320_00688829_00696138 NA coding downstream 432137 688688 ~ 696188 (-)
CI01000320_00586900_00592523 FAM210AA coding downstream 535802 585993 ~ 592523 (-)
CI01000320_01176457_01181900 NA coding upstream 46088 1174735 ~ 1181900 (-)
CI01000320_01207179_01217428 EPB41 coding upstream 78532 1207179 ~ 1217438 (-)
CI01000320_01263151_01266426 CTGFB coding upstream 134392 1263039 ~ 1266426 (-)
CI01000320_01310476_01318751 STX12 coding upstream 181697 1310344 ~ 1318751 (-)
CI01000320_01322036_01325638 NA coding upstream 193139 1321786 ~ 1325638 (-)
G454680 NA non-coding downstream 2665 1124882 ~ 1125660 (-)
G454677 NA non-coding downstream 19486 1108535 ~ 1108839 (-)
G454656 NA non-coding downstream 118424 1009652 ~ 1009901 (-)
G454654 NA non-coding downstream 122133 1005965 ~ 1006192 (-)
G454653 NA non-coding downstream 122726 1005200 ~ 1005599 (-)
G454707 NA non-coding upstream 234111 1362758 ~ 1387226 (-)
G454711 NA non-coding upstream 237614 1366261 ~ 1377788 (-)
G454722 NA non-coding upstream 267735 1396382 ~ 1396614 (-)
G454721 NA non-coding upstream 306193 1434840 ~ 1441993 (-)
G454733 NA non-coding upstream 313497 1442144 ~ 1442443 (-)
G454663 NA other downstream 72430 1051468 ~ 1055895 (-)
G454495 NA other downstream 599773 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 778123 346199 ~ 349445 (-)
G454686 NA other upstream 12595 1141242 ~ 1141880 (-)
CI01000320_01338270_01341123 SH3BGRL3 other upstream 207632 1336279 ~ 1343274 (-)
CI01000320_01426753_01430603 NA other upstream 298136 1426176 ~ 1430654 (-)
G456317 NA other upstream 2514590 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1293933 NA unknown NC_048579.1 CM023233.2 42255714 ~ 42256117 (-)