CI01000320_01310476_01318751 (STX12)


Basic Information

Item Value
gene id CI01000320_01310476_01318751
gene name STX12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1310344 ~ 1318751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_01310476_01318751.mRNA
ATGTCGTACGGAAGGACAGAGCAGCGCGCCCCACCAAAAGACTTCAGCAGCCTCATCCAGACATGCAGCTCCAACATTCAAAAGATCACACAGAACACGGCTCAAATCAAGAGCATGGTAAACCAACTGGGAACAAAACAAGACACCAGTGAACTGCGAGAGAGACTTCAGCAGGTGCAGCACTACACAAACCAGCTGGCCAAGGAGACCAACAAACACCTGAAAGACCTCGGCGTACTCTCTCTACCTGTCTCCCTGTCTGAACAGAGACAGCAGAAAATCCAGAAGGACCGGCTGATGAATGATTTCTCCGCTGCTCTAAACAACTTCCAGGCAGTGCAGCGTCGAGCCGCCGAGAAGGAGAAGGAGTCTGTGGCCAGAGCCCGAGCGGGGTCTCGCCTCTCTGCTGACGATGGAGGTCATGAAGAGCAGCTGGTCTCCTTTGATAATAATGATGACTGGGGTAAGACCACCATTCAGACAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTTATTAAAGAAAGAGAAACTGCCATTCGACAACTTGAGTCGGACATTTTGGATGTGAATCAGATTTTCAAGGATCTTGCTGTGATGATCCATGATCAGGGTGAAATGATAGGCTTACCGTATATATACAGAACGAAATATGAACAGCAGAAGATAACGTTAGGCCTATATGATACAGTACAACTTACAGAAGAGCATTGAGTCTCATAGGACACTTCCTTCGAGATGTTGTGTTTTTACCTGTTGGTTAAAAAATGAATATCCTATTGATCATAATACTGCGATCAAGCTGACAATAATAATAAGCTTGCAATAATTTAGACTTGAAATAAA

Function

symbol description
stx12 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

GO:

id name namespace
GO:0006906 vesicle fusion biological_process

KEGG:

id description
K13813 STX12, STX13; syntaxin 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_01310476_01318751.mRNA True 849 mRNA 0.46 8 1310344 1318751

Neighbor

gene id symbol gene type direction distance location
CI01000320_01263151_01266426 CTGFB coding downstream 43918 1263039 ~ 1266426 (-)
CI01000320_01207179_01217428 EPB41 coding downstream 92906 1207179 ~ 1217438 (-)
CI01000320_01176457_01181900 NA coding downstream 128444 1174735 ~ 1181900 (-)
CI01000320_01042859_01043564 NA coding downstream 266780 1042024 ~ 1043564 (-)
CI01000320_00935826_00945755 LRP12 coding downstream 364589 934432 ~ 945755 (-)
CI01000320_01322036_01325638 NA coding upstream 3035 1321786 ~ 1325638 (-)
CI01000320_01328278_01333798 NA coding upstream 9499 1328250 ~ 1333798 (-)
CI01000320_01338270_01341123 SH3BGRL3 coding upstream 18786 1336279 ~ 1343274 (-)
CI01000320_01345762_01346867 NA coding upstream 26911 1345662 ~ 1346867 (-)
CI01000320_01394827_01394991 NA coding upstream 76047 1394798 ~ 1396099 (-)
G454682 NA non-coding downstream 181697 1128325 ~ 1128647 (-)
G454680 NA non-coding downstream 184684 1124882 ~ 1125660 (-)
G454677 NA non-coding downstream 201505 1108535 ~ 1108839 (-)
G454656 NA non-coding downstream 300443 1009652 ~ 1009901 (-)
G454654 NA non-coding downstream 304152 1005965 ~ 1006192 (-)
G454707 NA non-coding upstream 44007 1362758 ~ 1387226 (-)
G454711 NA non-coding upstream 47510 1366261 ~ 1377788 (-)
G454722 NA non-coding upstream 77631 1396382 ~ 1396614 (-)
G454721 NA non-coding upstream 116089 1434840 ~ 1441993 (-)
G454733 NA non-coding upstream 123393 1442144 ~ 1442443 (-)
G454686 NA other downstream 168464 1141242 ~ 1141880 (-)
G454663 NA other downstream 254449 1051468 ~ 1055895 (-)
G454495 NA other downstream 781792 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 960142 346199 ~ 349445 (-)
CI01000320_01426753_01430603 NA other upstream 108032 1426176 ~ 1430654 (-)
G456317 NA other upstream 2324486 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location