CI01000320_01263151_01266426 (CTGFB)


Basic Information

Item Value
gene id CI01000320_01263151_01266426
gene name CTGFB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1263039 ~ 1266426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_01263151_01266426.mRNA
GCGATGTGTCAGGAATGCTCTCAGCCCTGTGACTGCCCGGCTGAGAGCCCTTTATGTCCTGTAGGCACCAGTCTAGTGCTGGACGGCTGCAGCTGCTGTAAGGTGTGTGCCCGACAGGCAGGAGAGCCCTGCTCTTTCCTGGAGCCATGTGACCATCATAAAGACCTGTATTGTGACTATGGTGTGCTCAGTGACACTGAGACAGGCATCTGTATGGCTCAAGAGGGTCAGACGTGCGACCTTGGGGGCGTGATTTACCGCAGTGGTGAGACGTTTCAGCCCAGCTGCAAACATCAGTGTGTCTGCATGAATGGGGAGATTGGCTGCGTACCAACCTGTGCCAGCAACATACGGCTGCCTTCTCCAGACTGTCCCTACCCACGACGCGTCCAGATCCCTGGCAAGTGCTGCGAGGAGTGGGTGTGCGACCAGATCCCACAAGAAGACACCTTCCAGTCAGCAATGGCTGCATATAGAGAAATAACTGATCAGAGTGTCCAGCCTGAGAGCGCAAGAGACAACTGCATCGTTCAGACCACTGAATGGAGTGAATGTTCTGCAACTTGTGGCATGGGTTTGTCCTCTCGTGTAACCAATGACAACGAGCAATGCCAGCTGGAACGGCAGACCCGCATGTGCATGATCCGCCCCTGCCATGCAGAGCTGGAAAAGGACATAAAGAGAGGGAAGAAGTGTGTGCGGACCCCAAAGAGCCAGCGCGGGATGCGTTTCGAGTTGTCTGGATGCCAGAGCGTCAGGCTGTATAAGCCAAAGTTCTGCGGGGTGTGTACAGACGGCCGCTGCTGCACACCTCACGCCACCGCCACAGTCGAGGTGGAGTTCCGCTGTCCTGAGGGCGACACTTTCAGGAAGAGGATGATGTTTATTAAGACCTGCTCCTGTCATCATGATTGTCCCCGGGAGAATGATATCTTCCTTGCCTCCAACTCACGGAGAATGATTGGGGACTATGATAATGACATGTGAGGAGCTGTCCAGTGTAACACACACACACACTGACAATCAAGCACACATGCACATGAGGCAGCTCCGTGTTTTACTGAACCCTGAAATACTCACATCCTGTGAGCATAAAAAA

Function

GO:

id name namespace
GO:0005178 integrin binding molecular_function

KEGG:

id description
K06827 CTGF, CCN2, IGFBP8; connective tissue growth factor (insulin-like growth factor-binding protein 8)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_01263151_01266426.mRNA True 1099 mRNA 0.54 4 1263039 1266426

Neighbor

gene id symbol gene type direction distance location
CI01000320_01207179_01217428 EPB41 coding downstream 45601 1207179 ~ 1217438 (-)
CI01000320_01176457_01181900 NA coding downstream 81139 1174735 ~ 1181900 (-)
CI01000320_01042859_01043564 NA coding downstream 219475 1042024 ~ 1043564 (-)
CI01000320_00935826_00945755 LRP12 coding downstream 317284 934432 ~ 945755 (-)
CI01000320_00745852_00758696 SLC25A32A, SLC25A32 coding downstream 503933 745030 ~ 759106 (-)
CI01000320_01310476_01318751 STX12 coding upstream 43918 1310344 ~ 1318751 (-)
CI01000320_01322036_01325638 NA coding upstream 55360 1321786 ~ 1325638 (-)
CI01000320_01328278_01333798 NA coding upstream 61824 1328250 ~ 1333798 (-)
CI01000320_01338270_01341123 SH3BGRL3 coding upstream 71111 1336279 ~ 1343274 (-)
CI01000320_01345762_01346867 NA coding upstream 79236 1345662 ~ 1346867 (-)
G454682 NA non-coding downstream 134392 1128325 ~ 1128647 (-)
G454680 NA non-coding downstream 137379 1124882 ~ 1125660 (-)
G454677 NA non-coding downstream 154200 1108535 ~ 1108839 (-)
G454656 NA non-coding downstream 253138 1009652 ~ 1009901 (-)
G454654 NA non-coding downstream 256847 1005965 ~ 1006192 (-)
G454707 NA non-coding upstream 96332 1362758 ~ 1387226 (-)
G454711 NA non-coding upstream 99835 1366261 ~ 1377788 (-)
G454722 NA non-coding upstream 129956 1396382 ~ 1396614 (-)
G454721 NA non-coding upstream 168414 1434840 ~ 1441993 (-)
G454733 NA non-coding upstream 175718 1442144 ~ 1442443 (-)
G454686 NA other downstream 121159 1141242 ~ 1141880 (-)
G454663 NA other downstream 207144 1051468 ~ 1055895 (-)
G454495 NA other downstream 734487 527059 ~ 528552 (-)
CI01000320_00346954_00349228 ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 other downstream 912837 346199 ~ 349445 (-)
CI01000320_01426753_01430603 NA other upstream 160357 1426176 ~ 1430654 (-)
G456317 NA other upstream 2376811 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location