Gene
RNA
| Item | Value |
|---|---|
| gene id | G455624 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000320 |
| NCBI id | null |
| chromosome length | 3894707 |
| location | 1902673 ~ 1902892 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU523081 | True | 220 | lncRNA | 0.36 | 1 | 1902673 | 1902892 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000320_01896359_01898516 | NA | coding | downstream | 4157 | 1895824 ~ 1898516 (-) |
| CI01000320_01719471_01731780 | NA | coding | downstream | 170797 | 1719306 ~ 1731876 (-) |
| CI01000320_01453536_01456193 | ME-T, NTL, TA | coding | downstream | 446396 | 1453156 ~ 1456277 (-) |
| CI01000320_01426753_01430603 | NA | coding | downstream | 472019 | 1426176 ~ 1430654 (-) |
| CI01000320_01394827_01394991 | NA | coding | downstream | 506574 | 1394798 ~ 1396099 (-) |
| CI01000320_01914015_01916289 | NA | coding | upstream | 10412 | 1913304 ~ 1916289 (-) |
| CI01000320_01996579_02046284 | NA | coding | upstream | 93466 | 1996358 ~ 2046284 (-) |
| CI01000320_02054421_02068560 | PHACTR4A | coding | upstream | 151519 | 2054411 ~ 2068560 (-) |
| CI01000320_02151521_02154094 | EDN2 | coding | upstream | 248350 | 2151242 ~ 2154201 (-) |
| CI01000320_02165761_02186455 | HIVEP3A | coding | upstream | 262869 | 2165761 ~ 2186455 (-) |
| G455623 | NA | non-coding | downstream | 292 | 1899602 ~ 1902381 (-) |
| G454968 | NA | non-coding | downstream | 12289 | 1890157 ~ 1890384 (-) |
| G454967 | NA | non-coding | downstream | 12742 | 1889414 ~ 1889931 (-) |
| G454960 | NA | non-coding | downstream | 17780 | 1884549 ~ 1884893 (-) |
| G454957 | NA | non-coding | downstream | 19071 | 1883288 ~ 1883602 (-) |
| G455628 | NA | non-coding | upstream | 5070 | 1907962 ~ 1908278 (-) |
| G455642 | NA | non-coding | upstream | 17488 | 1920380 ~ 1920597 (-) |
| G455656 | NA | non-coding | upstream | 31057 | 1933949 ~ 1934242 (-) |
| G455661 | NA | non-coding | upstream | 43240 | 1946132 ~ 1946360 (-) |
| CI01000320_01338270_01341123 | SH3BGRL3 | other | downstream | 561457 | 1336279 ~ 1343274 (-) |
| G454686 | NA | other | downstream | 760793 | 1141242 ~ 1141880 (-) |
| G454663 | NA | other | downstream | 846778 | 1051468 ~ 1055895 (-) |
| G454495 | NA | other | downstream | 1374121 | 527059 ~ 528552 (-) |
| G456317 | NA | other | upstream | 1740345 | 3643237 ~ 3648040 (-) |
