G455623


Basic Information

Item Value
gene id G455623
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1899602 ~ 1902381 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU523080
GAGAATTGTTCCATTTTCTGGGTTGCTGCAGTTTCCCGTTTTGGTTCCAGGCTCCAGTTCCTGTTCCAGTCCCGGTTCAAGGTTCCGGTCCCAAGATGTGCTAAGCTAAGTCCGACTCTACAGAGTTGTTAAGTTGCTCTCTCAAGACTCTGAAGCTCTAAAGAGAGAAACAAGGAAGTTCTGCAAGAAGAGAATTTGGGGAGTTAGAAAACTGCAATGGAGACAACGACGACAAGCTTAGCCCCCATCTTCAAAATATGTTCTGCACCAACTTCAAAATCCCCATCAGAGATCCTCCAGATCTGCATGTTCCAGACTGCCCAGATCTGCACTGACGTCAGAATCTAAAGATCCTTCCGTCTGCGTGTTCCAGAGAATAAGGATCATCTGCACAGACATCAGAACCTTCAAGGCTTCTTCTTCTGCATGTTCAAGGCAAAGGACTTTCTCTGTGCTCCAGGAGTTCAACGTTCACAAGTACTTCGTGTTCAAGGCTGTGAAATGGATTCCAACTCCTTTCTTCCCACTGCAATGCTGCCCAGCTCAACAAGTGGAAGACGTCACCCTCACCCATCACTTGCCAAACCTCTTTCCAGAGACCTTGGCATTAGTTTATATTGTCAGTATATGATTATCTAATTTGCATTAGATCTTGCATAGCTGATATCAGTTAATAACAAACAATCTCTCTGATTATTTGTTGAATTCAAAATAAGGTTTACCTTATTTCTTTTAGAGAAACTACAGTTAATCTTTCCATAAGATTAACTGCCATAGTAACATCCTACTCATTCACTAGCATTTATTAATCTTTTTGCACTTTGTCCATTCAGTAGTTGTTAGTTACTTTTGTATATCCTTTTATTAACCCTTTGATGCGTATAATCACACCGGTGAGATTAGAATGTTCAGTGCCTCACGTGAACTGCCAAATTCAAATGTGCTTGCGCGCTTTGGCTGGCGTTAAACCAGAGACGGACGTGCACAGCACTTTCATATATCACATATATGCAGTGTTTTCAACCAAATAATGTTTATTTTAGGTTTCAGACATTTAAATACACATGAGTACTAACAAAACAATATATTTAGAGTTTGTATAATACACAATGATGTCTATAGAAGCGGAAATAACAACCCTTTCCATTATAATTAGACGATAATTAGATGATGCACTTTTTGTCTCTCGGCTGGCCATTCAATGTTTAACTTGGCAACAGCATGAGTTATAAACGCAAGGAACGCTTGCCAGGTCACTTCCCTCAAAAAGTGACAGGCGGGAGCGGAGCTTTCTCAGGGAAAGACTTTCACAATGCTCACAACCAGCCCCCTCGAGGGCTGCTTGAGCATGCTCCGCTCCCAAACAAAAAACACATAAATCGTGTGTATCCCTGCCCGGGATGTAACGAGGGCAGGGAGGAACACACAATTTGAATTGCTTTCAGCTTGAACTTGCCCTCGCCATAATATTTATATATATTGTGCTTTGCAACAATGCAGGACAGACAACAATAAATAAGACTGACAGTCACACAGATCGCTTGCTGAAGATACAGAAGCTAACACTGTTTGGTCTGGGTATGCTTTAGTTTCCTGGTCGATGACGTCACCCGCCCAGGCCATTGGACTGATTTTACACGTGCTTCACGACGCAATCACGCAGAGGCGTTCCCACAGCATCGAAGACTCTGACGCAGCACGAGTTCCCTTGAAAGGGAAATGTAGGAGCTCTTTTATTATCTGGTGTACCATTTTTAGTTTAAAGGGAGATTCGTAAAGCTTCATGAAGCAGTGTTTTGAAATTGCCCATCACTAGAAATTGTGGAATAAAGTCGCTATTTTGTTATTTTTGGTGCACAAAAAGTATTCTCATCGTTTTATAATATTAAAGTTGAACCACTATAGTTACGTGAATTCAATTTTGTTTATCTAGAAAACTAACATATCTGGCAAGAACTTTTATCCTAGCACTAACCTTACCTAAAATTTTCATAGCCGTATGTGCACCTTGTCAAGGACAATGCGAGTGCGGAAGAAATTTTATTAATATGTTATGATTATGGAACATTGTCATTGTGTTATGTTTGCATTTCACAAGTTCACATTTACATTTAATTAAATAGAGTAAAGTTATGCGTATTTGGCGTGCTGTCCGGGGGGGAGGGCTCCAAGCTCAGACTTTTGGCCCAAACCCCGAGTACTCCCCCCGGTTGTGGTAAGAATAGATAGAACTAGAAGTGAGGAGATGGGGTGGAGGAGGGATGCTGATAAACTGTCAAATGAACAGAAGTAAGTCTGCTGTATATACAGTATACCTCTTGCCGTTGGTTGAGTTGATTAACTGAATGCTCTCCACTTGTGCTAATTAGGTTAATTATCTGAACCTGCTCCTCCCGAACTTTGTTAATAAAACATCATATTCTGTATTGCATAGAGAGACAGGATGCAGTTAATTTGCACGTGAATTGGGTCTTACATGCTTCTCTGCCTTTGCCTGCACAAAGAACAGCTATTGACCTTATAGATGTGACCATTATATGACAGAAAATAAGAAATGTGTGACTATTATATGACAAGAGAAAGAATACATTCAAGAAACTGGTAAACATGTTCCTAATATGTTAAAGAAAACTACAATTGGACAGAGGCTTCAGCCCTGAAGGTTAGAGAGATATAAAAGTGGGAAGGAGCCCTCCCTTCCTTGTTACACTCTGCAGACACTTTGAATGACGGTATGACTCTTCACCTTTTCTTGCAAGAAAATAAAACTTTTGTGAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU523080 True 2780 lncRNA 0.41 1 1899602 1902381

Neighbor

gene id symbol gene type direction distance location
CI01000320_01896359_01898516 NA coding downstream 1086 1895824 ~ 1898516 (-)
CI01000320_01719471_01731780 NA coding downstream 167726 1719306 ~ 1731876 (-)
CI01000320_01453536_01456193 ME-T, NTL, TA coding downstream 443325 1453156 ~ 1456277 (-)
CI01000320_01426753_01430603 NA coding downstream 468948 1426176 ~ 1430654 (-)
CI01000320_01394827_01394991 NA coding downstream 503503 1394798 ~ 1396099 (-)
CI01000320_01914015_01916289 NA coding upstream 10923 1913304 ~ 1916289 (-)
CI01000320_01996579_02046284 NA coding upstream 93977 1996358 ~ 2046284 (-)
CI01000320_02054421_02068560 PHACTR4A coding upstream 152030 2054411 ~ 2068560 (-)
CI01000320_02151521_02154094 EDN2 coding upstream 248861 2151242 ~ 2154201 (-)
CI01000320_02165761_02186455 HIVEP3A coding upstream 263380 2165761 ~ 2186455 (-)
G454968 NA non-coding downstream 9218 1890157 ~ 1890384 (-)
G454967 NA non-coding downstream 9671 1889414 ~ 1889931 (-)
G454960 NA non-coding downstream 14709 1884549 ~ 1884893 (-)
G454957 NA non-coding downstream 16000 1883288 ~ 1883602 (-)
G454942 NA non-coding downstream 30384 1868989 ~ 1869218 (-)
G455624 NA non-coding upstream 292 1902673 ~ 1902892 (-)
G455628 NA non-coding upstream 5581 1907962 ~ 1908278 (-)
G455642 NA non-coding upstream 17999 1920380 ~ 1920597 (-)
G455656 NA non-coding upstream 31568 1933949 ~ 1934242 (-)
CI01000320_01338270_01341123 SH3BGRL3 other downstream 558386 1336279 ~ 1343274 (-)
G454686 NA other downstream 757722 1141242 ~ 1141880 (-)
G454663 NA other downstream 843707 1051468 ~ 1055895 (-)
G454495 NA other downstream 1371050 527059 ~ 528552 (-)
G456317 NA other upstream 1740856 3643237 ~ 3648040 (-)

Expression


Co-expression Network