RNA id: TU522090


Basic Information

Item Value
RNA id TU522090
length 767
RNA type TUCP
GC content 0.46
exon number 2
gene id CI01000320_01426753_01430603
representative False

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1426176 ~ 1430654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACACAATGACAACAGCTTCACATTAGATAGGCATTACGTGAGAGGAAATGAAAAAATACTTTAGCAAACAACATCCTCATGGAATTCTCTTCAGCATCCTAAGCCGTAAGTGTGACTTTAAACACTTCAGTTATCCAAAGACACACAGCTGTCACTGTGAGCGATTAGTGTGCTTGAAAAACCCACATACCACCTGTCATGCTGCCTTTGGTGTCTTAGTAAAAACGATTCACTTCATGAAGAGCTTACCTTCCTTTCAAAATCTGCCGCTCAATGACCGACTCGTCCTTCTTCAGAACCGCTGGGTGCCTCTTTTCCTCCTGGGACTTGCGCAGGAGCACATCACTTTTGAGGTGTGGGACTTCCCTGCTGTCAGCATCCTTAGAAACATATTGTTGAATGGTCAGCAGAAATCAGATGACTGTCCGCCCACCCTGGCAGAAGTGTACAAACTTAAGATGTTCCTGAACAAAGTATGGAGTCTCGACCTGAGTCTAAATGAGTATGCATATCTCAAGTGTGCAATACTGTTCAGTCAAGATATTCCTGGCCTGAAGAGTTTGGCAGTGACAGCAGGACTGCAGGAGGAGGCCCACAGAGCTCTGCACATGCTTATTCTCTCCCAACATCATCCCAGAGATCACCATACATTCAAGGACATGCTGTTTATGGCTAGCACTCTACAGATAGAGGCCCGAAGCCTGGTGACAGAACTGTTTTTCAGACCTATCACTGGCCAGACAGATCTCCAGGAACTCCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522076 lncRNA downstream 30169 1396382 ~ 1396614 (-) True G454722
TU522053 lncRNA downstream 39582 1362758 ~ 1387201 (-) False G454707
TU522073 lncRNA upstream 4187 1434840 ~ 1441993 (-) False G454721
TU522072 lncRNA upstream 6014 1436667 ~ 1438932 (-) True G454721
TU522093 lncRNA upstream 11491 1442144 ~ 1442443 (-) True G454733
TU522098 lncRNA upstream 27091 1457744 ~ 1462005 (-) True G454738
TU522122 lncRNA upstream 92257 1522910 ~ 1523116 (-) True G454760
CI01000320_01394827_01394991.mRNA mRNA downstream 30684 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 79916 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 83509 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01328278_01333798.mRNA mRNA downstream 92985 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01322036_01325638.mRNA mRNA downstream 101145 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
CI01000320_01453536_01456193.mRNA mRNA upstream 22503 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01719471_01731780.mRNA mRNA upstream 288653 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 465171 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 482651 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 565705 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
TU521994 other downstream 85567 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 284903 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 370888 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 898231 527059 ~ 528552 (-) False G454495
TU523828 other upstream 2212584 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2212584 3643237 ~ 3648040 (-) True G456317

Expression Profile