RNA id: CI01000320_01338270_01341123.mRNA



Basic Information


Item Value
RNA id CI01000320_01338270_01341123.mRNA
length 3163
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000320_01338270_01341123
representative False

Chromosome Information


Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1336279 ~ 1343274 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGATTATGAGATTTTTCTACAGCACATGTCCTATTAAGATAGATAGTATTCCCAATGCATCCCCAATGCAATTATTATCACTGCGGTGCCTTAATGAGCATTTTAGATGGACCTCAGTGATTCTTATCACACATGTCTGTAATAACAGTAGCACTGTATTATTGAGATTGCTTGTATTTGCTTTGAATGCCCAGTGTACTGATTTTCTTTAAAGCATTATTGCACTTACTGGTCCCTTATTTTATTGCACTTAAGTCAAACAAACCAGTACCTACTTACAGTATAAACCAGTGTACTTAATCTGGATGTTAAAGGGAATGCAAAACAGAAGCACATTTACTTTGACCAGATCAGCATTTCTAACTGTTGTTCTCTTTTCCCAGTTATCCTTCTCTCTATATGTAAAAGGGACACCCAGTGATTTGGCTGTCCTGATTGGGATCCTTAATTAAAGAACTAAATAATGTTCCACTGTGTATACTACATGCTACTATTTTAACAGTATATGAAGTAGCATGCAATGATTAAAAAAAGAAGTATCAAACCTACTGCTACATTGTTGCCACAATTTTATGCTCTGCAATTTCATGTATAAAAAATGCAGTCTGGTCAAATAATGGTGGTTACATTCCTGAATGGTATTGCAGCTTCACTGTTTACGGAACACTGCATGGGTTTCCCAAACTGGGGATTATGAACAAAACAACTCTGAGGGTTTATAAGGGAACTACAGGAGGTTTGTGATTTGACTAAAAGTTAATTAATCAACCACATTAATCAAATTAATTCACAGGTGTTTTACCAGTATATTGTATTATTTTGTATTGTATTGTGTTTGAGGGTTAAAGAAAACTTAAACTTAACGGAACATGTCCTGTCAGAAAATTGCCAGTACCTTTTCTGTTTTTCTCCAGATTTTTTTTTTATAGCGTTGTATACACTTTTGCTGTTACTGTTTAAAAAATATATGTATAATGCACATTTTAAATAGTAGTATGCTAAATACTACATGCTGCACTTTCTTAACCCATTTCTATCACAAGTTGTGGAAGTGCTTTCATCTGTGTATTTTTTCCAAACTGTTTGGGCCTGACTAGAGCATTTTATAAAAGAAAGGCCACCTTGTTTGGAGATGGTCATGTGGTTTGATTAAACATTCAAAGTGATGTTATACTGCCATCTTGTGTTTTCTTTTGAATGATCAGCTTTATTGTTAGATTAAAATAGTTTTGTTAGCATAAATACGTAAAGGTCAGAAAACAGGCAGATCTATGCAGAACTTGAATGTCCCATGTGGACTGTAAAACAGGAAACCGTTGACAGTTTCCTGGAAAATTTCTGATGCAGTGGTGCAGGGCTGTGACTGGATTGGAGCAATCTCTCCACTGCAAACACACTGATAAACTTTATCTGAGGGAGGAACTTCCTCTTTTAGAATTGTTACTTTGGCTATTTGGGTCATTGTACAACTGCATTGAATTATTTTCAAAAACTCAGTAATCACACATTAAACCAAATTTAGCCTACTACATTGAGTTTAATTGATCTATTTTAAAGCCTTTCTAAATATTTGCATGCTGTTTACCTAATAGCCTACATCAATTGTTTGTTCACTTATTTAGCTATTTTCAATATTCAGTTGTTTACAAAAATCATGGTAAAAAGGGTTGAATTTTTTTTAAATGGTTCCCACTGACAAAACCTACAAAATATAAGATGAAGTGGTAAAAAGAGGAGACTTCAACTTGTCCTGAGGAGTTTACATCCATCATGATAGAGATCTCTTGTTAATGAATTAATGTTCGTAAAAAGGGAGGGGGTGTGTCAATACACTCTTAAAAATAAAGTAAAATAAGGTTTTTTTGATTCCCCAAAGAACATTCTTAAAAGAACCGTTTTTTTTCTTAGTGTAAAGAACATTTTACTAATGTAAAGTACTTTTCCACTATAAAGAACCTATTGTGCAATGGAAAGGTTACATATGTTCACGAGGAAGACAAAATGAGACTGCATTTCCTTGTGTAAAAATAAGGCGCTGTCTCTTTAAATAAATGAATAGCGGGTGTCAGTAGTGAAACGGCGGCTGTAGAGCAAGAGAACGGGAACTGATCGCCTCCAGAAACACAAAGGGACATTACGATCCAACACTATGGGCATCAAACTGTATTACACCACCGTCACTGCATCAAGAGAGGTCAAGTCTCAGCAGGCGGAGGTTATGCGTATTCTGGACAGTAAGAGCATCCAGTATGAGTTGATTGACATCTCGGTGGGCGGTGCAGTCCGGGATGAGATGAGGAGTAAATCAGGCAACCCTACAGCAATCCCACCTCAGATATTCAATGAAGACCAGTACTGTGGGAACTACGAGATGTTTTCTGAGGCAGTGGAGGCAGACACAGTGGAACAGTTTCTGAAGATTGCGTGAGAGCCAAACCTGGTAGCATCCAACATCCTCTTCCCTTCTCTGGTCCATGTCCACATTCCCAAAGGGAGGCCTGCCTGTTCCCCTCTGCTCCGCTGGCGGTGCCTGCCTTATAAGTCTCAATGCCATGCCACATGCCAAAAAAAAATCAACAGAAAAGCACATACTTACTCTGTACCACGAAAATATTTACCCTCAATCTGAGACACGGTCACTCATTTACTCCTTTGTGCTTTTGTTTTGATTATCTTGTTTATTTCCTCTCGTGTCCTCTTTCGTTCCGACGCTTAAACGCCACTAATTTGTCTTAATCTCGTTTAGATCAAAGCGCTTGGATGTGTAGTAATTAGGTCAACTAATCTGGGTAGCAACCCCATGTTTATTCCAGATTGAACTAATCCACAGTCCAAGAAATACAAGAATCACTTTGGGTCCAGAACTTTAATCAGTTTGCCAATTTGCATAGATGGTCTTTATATGTTCCCATCTACAGTACTGATAAATAATTCGGAAATGGTTAAGTATTTGTCGGCTAAAAATTTTATTGTGTTGGTACCTTAAAAACACACGTTCTAATTTCCAACAAGATGTGAACTAGCTTTATTGGATTCTATATTAAGTACACTGCTTTGTTTTGTATGGTTTAGCAGTGTTGCAGGTATGCTCTGACTTCCATTTAACATTCCCAAATTCAGGGATTGAAAAACGTTCCATTGCGTTGAACTGTGCCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU522021 lncRNA downstream 208890 1128325 ~ 1128647 (-) True G454682
TU522019 lncRNA downstream 211877 1124882 ~ 1125660 (-) True G454680
TU522016 lncRNA downstream 228698 1108535 ~ 1108839 (-) True G454677
TU521992 lncRNA downstream 327636 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 331345 1005965 ~ 1006192 (-) True G454654
TU522048 lncRNA upstream 19484 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA upstream 19484 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA upstream 19484 1362758 ~ 1387201 (-) False G454707
TU522058 lncRNA upstream 22987 1366261 ~ 1377788 (-) True G454711
TU522049 lncRNA upstream 39902 1383176 ~ 1387201 (-) False G454707
CI01000320_01328278_01333798.mRNA mRNA downstream 3739 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01322036_01325638.mRNA mRNA downstream 11899 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
CI01000320_01310476_01318751.mRNA mRNA downstream 18786 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01263151_01266426.mRNA mRNA downstream 71111 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01207179_01217428.mRNA mRNA downstream 120099 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01345762_01346867.mRNA mRNA upstream 2388 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01394827_01394991.mRNA mRNA upstream 51524 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01426753_01430603.mRNA mRNA upstream 82902 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01453536_01456193.mRNA mRNA upstream 109882 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01719471_01731780.mRNA mRNA upstream 376032 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
TU522025 other downstream 195657 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 281642 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 808985 527059 ~ 528552 (-) False G454495
TU521809 other downstream 809327 527059 ~ 528210 (-) False G454495
TU522089 other upstream 83509 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 83509 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 83509 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU523828 other upstream 2299963 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2299963 3643237 ~ 3648040 (-) True G456317

Expression Profile