RNA id: CI01000320_01328278_01333798.mRNA


Basic Information

Item Value
RNA id CI01000320_01328278_01333798.mRNA
length 1287
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000320_01328278_01333798
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1328250 ~ 1333798 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTATCTTGTGGATTTGGCCACAGGTTTTCATTAGCTAAACATCTTGATCAGACTTCTCTACAAGATATTATCTGTACTGTAAAGGACAATGATCATCAGGAGCCTCTATCCAGGTGTCCTGAAGTCCCCAATGGACAGTCCAGTCCGTCAGCAAGTGTGAGTGCGCCACATCTGCTGAAACAGCTAGACTGTGCTGAGATCATGAGGATCGAGGACCACATTTGCTGGAAAAATGCCATCAGAAATAAGATGAGGGAAGGAGGATTCAGTGCCGACTTTGAAGGGATCTGTCGCGAGGACGGCCTTCAGGTGGTTGTGAAATTCGCACCGAAGATGCCATACATTAGTCTTCCTGACCTTCCCAGACCAGTTTCTCTTGAGTTGGCCCTGACACTCATTGCCAATCAAGGTCCCAGCTGTCATCACATCATAGAGCTGCTGGACTGGCAGGACAATCCAGACCATTATATAATGGTCTTAGAGCGTCCCTCGTCCTGCGTGAACATGCACAGCTTTTGGCAGGATCATGGCAACCTCTTCAGAACAGAAATGTACTGTCCTCCAGAGTATTTTGAGAAGGACGAGTACCATGGGAAGCAGGCAACGGTGTGGTCGCTGGGGGTGCTGCTGTTTGCTTTGATCACCATCCTTTTCCCAGACAGCAGCAATATCAGTTTGATGGACGCTGATGTATGGTTCCAGCAGGGCTTCTCAGATGGTCCCAGAGATCCATGTCAAAGAGGCATCAGAGGTTTCAGTCATGGTCCCAGCCACATAGTTCCTATTCTCAGTTGCCTTGGGCCTAGACATCCTGTCAGAGCAGCTCCAGAAATCCCTGTGAAGGCCACCCTAAAGGGTCCTGATCCTGCTGCTCCAGAAGAAGGACGGAGAGGTCATATAACAGGTCCCTGTCTCAACCTGGAGGTTCCTGCTATGGTTCCACAGCTCTGTGTAACAGCAGCTTCAGCTGCACAGCTTCCCAGAGGTTCTGGACATGACCGGGTCACACTGATGCCCGTCATGTCCACCACAAAGGTTTCTCTCATGACGGCTACCAAAGAAGTTCCAGCCAAGGCAGTGTTTGCTGTTGCAGCCTCAGCCAGAGCTGGTGTCCAAGGCTGCTCCAGTCCCAAAGCTCATCTCAACCTCCCTGGCCGAGAGTTTCCTGCTAAAGCTGCTCTGGTTCTTGCAGTTTCTGCCCTGACTGCTCTTGATCCTCTCACAGTGTTTCTTGTCACTGGTGTGATTCCTCCATAAATATATTACACCTGTATACCACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522021 lncRNA downstream 199603 1128325 ~ 1128647 (-) True G454682
TU522019 lncRNA downstream 202590 1124882 ~ 1125660 (-) True G454680
TU522016 lncRNA downstream 219411 1108535 ~ 1108839 (-) True G454677
TU521992 lncRNA downstream 318349 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 322058 1005965 ~ 1006192 (-) True G454654
TU522048 lncRNA upstream 28960 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA upstream 28960 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA upstream 28960 1362758 ~ 1387201 (-) False G454707
TU522058 lncRNA upstream 32463 1366261 ~ 1377788 (-) True G454711
TU522049 lncRNA upstream 49378 1383176 ~ 1387201 (-) False G454707
CI01000320_01322036_01325638.mRNA mRNA downstream 2612 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
CI01000320_01310476_01318751.mRNA mRNA downstream 9499 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01263151_01266426.mRNA mRNA downstream 61824 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01207179_01217428.mRNA mRNA downstream 110812 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01176457_01181900.mRNA mRNA downstream 146350 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01338270_01341123.mRNA mRNA upstream 3739 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01345762_01346867.mRNA mRNA upstream 11864 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01394827_01394991.mRNA mRNA upstream 61000 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01426753_01430603.mRNA mRNA upstream 92378 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01453536_01456193.mRNA mRNA upstream 119358 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
TU522025 other downstream 186370 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 272355 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 799698 527059 ~ 528552 (-) False G454495
TU521809 other downstream 800040 527059 ~ 528210 (-) False G454495
TU521994 other upstream 2481 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 92985 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 92985 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 92985 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU523828 other upstream 2309439 3643237 ~ 3648040 (-) False G456317

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU216464 True 2984 TUCP 0.47 7 NC_056719.1 14259685 ~ 14263667 (-)