RNA id: TU522019


Basic Information

Item Value
RNA id TU522019
length 779
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G454680
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1124882 ~ 1125660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATGAACACAAACTAAAACTATGAAGGGAAGTATCTTTGTAAATGAAAAGCTATGCTTTATCTTTTTAGATAGCCATTAGCTTGCTTGTTGATTACAACAGTTCACTTCTCATGCTTGATATCATATCATGAAAAACTTTCCTTTATCTTTTGAAATAAAATGTTGATATAGATGTTGATGCGCCAGAGAAACAAGTACGCAGCCATCGTTAGAATTTTGCCTTTGAACTTCCATTTTTGTGGTAGCTCTGTATATTTCTATGGCATTGCTATCATAGAGTAATTAGCTGGTGAAGTGGATTTACTTATTGTATAGTTAATGAAAGTTATCATGAGCATTGTAATGTTTGAAGCGGATGTCATAACAAATGTCAGTAGACCAGGAAGATTTTAAAACGAAGGGTTCATTCATAAATCCTTAAGATCTTACCTTCATGCTGTGGAAATACAAACTGGAGGACAGAACACAATGAGCGCAGCACTAAGAAGGGGTGGGGCTAAATAAGGTCTATACAGTGATAACATAAAGCATAGTCAGTGTTGCCAGGGTTGCAGTTTTCCCACACAATTGGGCATTTTTGAATATGTAGTTGCAGGCAAAATTACAAAGCCGTGGTCTGCGTTTTTTTTGGGCTACTTTTATAATGTACCGCGGCCTCGAAAAAAAGTTTATCCGTAGACAAAAAAAATTGTCACGGGTGGTTGCAGGCAGACAGATGAAGACAGAAGAATAAAGTTCCAACACAAGTTTAATAACAAATATCCAAAAGGTAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522016 lncRNA downstream 16043 1108535 ~ 1108839 (-) True G454677
TU521992 lncRNA downstream 114981 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 118690 1005965 ~ 1006192 (-) True G454654
TU521989 lncRNA downstream 119283 1005200 ~ 1005599 (-) True G454653
TU521988 lncRNA downstream 119749 1004823 ~ 1005133 (-) True G454652
TU522021 lncRNA upstream 2665 1128325 ~ 1128647 (-) True G454682
TU522048 lncRNA upstream 237098 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA upstream 237098 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA upstream 237098 1362758 ~ 1387201 (-) False G454707
TU522058 lncRNA upstream 240601 1366261 ~ 1377788 (-) True G454711
CI01000320_01042859_01043564.mRNA mRNA downstream 81318 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_00935826_00945755.mRNA mRNA downstream 179127 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_00745852_00758696.mRNA mRNA downstream 365776 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00688829_00696138.mRNA mRNA downstream 428694 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 532359 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_01176457_01181900.mRNA mRNA upstream 49075 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 81519 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01263151_01266426.mRNA mRNA upstream 137379 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01310476_01318751.mRNA mRNA upstream 184684 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01322036_01325638.mRNA mRNA upstream 196126 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
TU522002 other downstream 68987 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 596330 527059 ~ 528552 (-) False G454495
TU521809 other downstream 596672 527059 ~ 528210 (-) False G454495
TU521812 other downstream 596672 527059 ~ 528210 (-) False G454495
TU521675 other downstream 774680 350103 ~ 350202 (-) True G454374
TU522025 other upstream 15582 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 210619 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 301123 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 301123 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 301123 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603

Expression Profile