RNA id: TU522058


Basic Information

Item Value
RNA id TU522058
length 784
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G454711
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1366261 ~ 1377788 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTTTTGAAAGGTAGTATACTTATTATTAGTAGCCTGGTGTGTAGCTAACTACTTTTTAAAAAGGATAACTTGAGTCTAGTCAGTTTTAATTATTAGTAGCTTGGTAGCCTATTTGTAAAGTTGCACAAATTACACCAACAAAAGATTTTGAAATTTAGAAATCTGATTAAAGCACAAACACTAATATATTTGAAAGCAACAGTGTGAAAAGCTCTATTAATCTCACCTGACGTGTTTGCCATGAATGAGTGAGAGTAGGCAGAGATTCACCATATTCCACGAGGTGCTGTTGTCATAGCGCATCAAGTTCAGTGCCATGGCAACATGTGAGTGACAATTGTCACAACAAAGGTTGTGCATTCTCTGTTTATATTCTTCTGACGCATTGTGAATTGCTGTGTCCCACACATTAGATCCACTGGCATATACTTTACTTGCATCTAACATCCAGTACTTTGTTGGTCTTCCAAACGCCATGTTGTCTTCTGAGACAAAGTATGGACCTGCAAAATCACGGATCACTCCAGTGGAGGTGCAGATGCCCATGTGGCCAATGAATGGAAACAGCCATGATAACACGGGGATTGGCGTCCATACAATACAGTAGGGATAGCGGCTTATGCTCGGGTCTATCCTCTCAAACGCTATGTTATAATTCTTCATGGTCTCTATTTCGACAGCATCCGCCATCACCAGCTGTGAGAAATGAACTTCATTCGTTCCGCTTCCTGGAAGCTGCAGCGCGCTGGCGACACGCGCGGCGCGTTTCCGGGGTCCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522021 lncRNA downstream 237614 1128325 ~ 1128647 (-) True G454682
TU522019 lncRNA downstream 240601 1124882 ~ 1125660 (-) True G454680
TU522016 lncRNA downstream 257422 1108535 ~ 1108839 (-) True G454677
TU521992 lncRNA downstream 356360 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 360069 1005965 ~ 1006192 (-) True G454654
TU522049 lncRNA upstream 5388 1383176 ~ 1387201 (-) False G454707
TU522050 lncRNA upstream 5388 1383176 ~ 1387201 (-) True G454707
TU522076 lncRNA upstream 18594 1396382 ~ 1396614 (-) True G454722
TU522073 lncRNA upstream 57052 1434840 ~ 1441993 (-) False G454721
TU522072 lncRNA upstream 58879 1436667 ~ 1438932 (-) True G454721
CI01000320_01345762_01346867.mRNA mRNA downstream 19394 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 22987 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01328278_01333798.mRNA mRNA downstream 32463 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01322036_01325638.mRNA mRNA downstream 40623 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
CI01000320_01310476_01318751.mRNA mRNA downstream 47510 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01394827_01394991.mRNA mRNA upstream 17010 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01426753_01430603.mRNA mRNA upstream 48388 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01453536_01456193.mRNA mRNA upstream 75368 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01719471_01731780.mRNA mRNA upstream 341518 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 518036 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
TU521994 other downstream 25045 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 224381 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 310366 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 837709 527059 ~ 528552 (-) False G454495
TU522089 other upstream 48995 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 48995 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 48995 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU523828 other upstream 2265449 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2265449 3643237 ~ 3648040 (-) True G456317

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027848 True 944 mRNA 0.48 6 NC_007130.7 13994563 ~ 14035892 (+)