RNA id: TU522073



Basic Information


Item Value
RNA id TU522073
length 1421
lncRNA type read_through
GC content 0.37
exon number 5
gene id G454721
representative False

Chromosome Information


Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1434840 ~ 1441993 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAAATCTAATTATCTCGTATTTAAAAAGACAATCATGAGGGTCTCTCTATGACATAATTTCTGGTTTTATGTTTGTTTGTTTTTGTTTTTTTTGGTTGCACCACTTGACTGTATTCTTACTTCTTCAGGATATCCTGCTTCTTCTGCTCTTCAGAGGTGGGCAGCCCCATGGACTTCTGCCTCTGATCATACATCATCTTCTCCACCATACTGCGTGTCTCACCGTCCAAATCTGACAGCTGAGCAGATTCCATTTAAAAACACAGCATGGGATGAAGGTGCAATCCATCATTTTGTCTTATAAAAATGCAATATTTATTAGACTACACAATGATCCCAAAGTTTCATCAACCTTGAACATGCCGTTTGAAATCAACCCTTGATCAAAAACCTCATATTCCTGACTAGGAAACCGTTTGCTCTTACCTTGGAATTCTCTGGGCAAATTTTCTTGGTGTTGATCTCAGGGTCTGTGGTCACTAACTTGCTCCACCACTCCATTTTGTTTATCTGAAATAAACGTGTATCATTTGTCATCCCGGTATAACAATGTATCATTGTATCATGTATCATTGTTATATATCACAAGCTCACATAAATGCCATCTATGCATGTTCTCATCCATACCTTCTCAAAATGGATCGTGACCACTTTCCCATCCTCTATAAGCCAAGAGCTCTCCTCCACTTTCACCTCATTGTACAGCTGCCCGTCAATCACAGGCGGATGACCCTTCAATCCGACCTTCAGGGAACGCCGCTGTATGTCCACCACCACATCCTTCCCCTTCAGACGGAAGCTCACATCGAAAGGCACAACCAGATCCACTTCAGAAAGGGTCTGAGTCCACCGGTAGTTTGAAAGGTCTGCTCCGTTTCCAGCATTAGGTTTTATCTTGTCTTTGTCCTTTTCATCTTCTTCTCCTTCTGAGTCCGACCCCTTTTTTGTCTTTGTCTTTTGCTTTTTCTGATGTATCTATGTCTATTTTCTCAGCTACTCCAGAATTTTTCGTTTCTTCTTGTTTTGTTTGATTTAATTGTGACTGGAGTCTCTCGGCCTCCTCATCAGTGAGTTCTTTGATTCTGGGCTCCTCTGCATCCTGCTTCCTCTTTTTCTCCTCTTCCTTCAGTTTGGCAGCTCTGTCAGCTTTCTCCTTCTTTTCTTTCTCTTGTCTGGACTGTTTGTCTTTCTGAACTTTGAGGGCGAGCTGATTGTGATGAGCAAACACCTCTTTAACCAGCTATAGGACGAATAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU522076 lncRNA downstream 38226 1396382 ~ 1396614 (-) True G454722
TU522048 lncRNA downstream 47614 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA downstream 47639 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA downstream 47639 1362758 ~ 1387201 (-) False G454707
TU522049 lncRNA downstream 47639 1383176 ~ 1387201 (-) False G454707
TU522093 lncRNA upstream 151 1442144 ~ 1442443 (-) True G454733
TU522098 lncRNA upstream 15751 1457744 ~ 1462005 (-) True G454738
TU522122 lncRNA upstream 80917 1522910 ~ 1523116 (-) True G454760
TU522126 lncRNA upstream 82494 1524487 ~ 1524770 (-) True G454761
TU522134 lncRNA upstream 89128 1531121 ~ 1532421 (-) True G454763
CI01000320_01426753_01430603.mRNA mRNA downstream 4186 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 38741 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 87973 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 91566 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01328278_01333798.mRNA mRNA downstream 101042 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01453536_01456193.mRNA mRNA upstream 11163 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01719471_01731780.mRNA mRNA upstream 277313 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 453831 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 471311 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 554365 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
TU522089 other downstream 4187 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 4187 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 4187 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 93624 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 292960 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 2201244 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2201244 3643237 ~ 3648040 (-) True G456317

Expression Profile