RNA id: CI01000320_01719471_01731780.mRNA


Basic Information

Item Value
RNA id CI01000320_01719471_01731780.mRNA
length 873
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000320_01719471_01731780
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1719306 ~ 1731876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTATGGATTATCACATACCAACATAGTCATGAGGAATGCCACCCACCTGATGAAAATTAAGGCCGTTCCTGAAGAACCGCAGAACTAATGGCATGATGAGCAGCAACATTGACTTTATAAAACCAAGCAAACGTGCATGGAGAAGACCAGGTAGCGGCAGCACAATTATCCGCAAAGGAAACTCCTCTAAAAAGCTGGGACATCGCACATTCCCTCATAGTGCCTTGTCAGGAGACACCACCAAAGCTGCAACAGGCTGCTCTATCTCCGGAGCACGACTCACCCCGATGGAATCTGCTTCAGCCATAGATGCTAGCGTCCAAACAAACTTTGAGCGCCGCTTAGATGGGAAGGGAGCACTGGCTGCCGCAGACGCCTTGCCGCAGATGCCTCGCAAAGGGGCTTCATCCAACTGCCCGAGTTTCACCGTTGAATTAGCGTCTAAATCAGCAAGACAGAGCCGTCGTTCCGACATAGGAGACGCGCAGGCGTGCCCGAAGAATGGTAATGCGATGCAGCTTTACATACGCTACCCCAATACATTCCCTTTCGAGGGAACAGGTGCTAGGGAAAACCCCCAGAGCTCCATGCTCCAATACTTACCTTACAGATATTTTAACAGGGAAACTCCACCACAGAAAGGCACCCTAACATTTGTGGAGGGGGACAAAATGAGGGAATGGGAGCTTGAGTGCCTGCCCAGATAACTCTTATACTATTCCTTTCACTTAAGGAGCGACTTACAGAAGGGGGCATATGAGAACCTCTCAGAATGTCCAGCCTAAACTGTTATACAGCATACAAAAGGATGGTTCATTTTTAATCCATCCATAGCTTACCAACATTCTGCTCAATAATATAAGGCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522235 lncRNA downstream 16935 1702140 ~ 1702371 (-) True G454840
TU522232 lncRNA downstream 27565 1691467 ~ 1691741 (-) True G454837
TU522225 lncRNA downstream 30298 1676299 ~ 1689008 (-) True G454830
TU522218 lncRNA downstream 51078 1667914 ~ 1668228 (-) False G454826
TU522219 lncRNA downstream 51078 1667914 ~ 1668228 (-) True G454826
TU522344 lncRNA upstream 137113 1868989 ~ 1869218 (-) True G454942
TU522359 lncRNA upstream 151412 1883288 ~ 1883602 (-) True G454957
TU522362 lncRNA upstream 152673 1884549 ~ 1884893 (-) True G454960
TU522369 lncRNA upstream 157538 1889414 ~ 1889931 (-) True G454967
TU522370 lncRNA upstream 158281 1890157 ~ 1890384 (-) True G454968
CI01000320_01453536_01456193.mRNA mRNA downstream 263029 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 288652 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 323207 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 372439 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 376032 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01896359_01898516.mRNA mRNA upstream 163948 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 181428 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 264482 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 322535 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
CI01000320_02151521_02154094.mRNA mRNA upstream 419366 2151242 ~ 2154201 (-) True CI01000320_02151521_02154094
TU522089 other downstream 288653 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 288653 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 288653 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 378090 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 577426 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1911361 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1911361 3643237 ~ 3648040 (-) True G456317

Expression Profile