RNA id: TU522219


Basic Information

Item Value
RNA id TU522219
length 268
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G454826
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1667914 ~ 1668228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAATGACAATATCTGATTATGGTTACACTTAAAATAATTACAAAATAGATGTATGAGATGATAAAATCATATACCATTAATCGTACCCAGCATGTATGTCAAAAGTTACCTGAGAGATAGAGAGAGAGAGTGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGACCAAGAAAAGCCAAGAATCAAAGAGCCAGAGCAACAGTTACAATCCATGTGACTGAAACCAAAATATGAGACATTCAAACTGACCAATCAGGACATTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522216 lncRNA downstream 3351 1664364 ~ 1664563 (-) True G454825
TU522215 lncRNA downstream 4129 1663539 ~ 1663785 (-) True G454824
TU522214 lncRNA downstream 11765 1655947 ~ 1656149 (-) True G454823
TU522195 lncRNA downstream 33275 1629238 ~ 1634639 (-) True G454817
TU522115 lncRNA downstream 68293 1596825 ~ 1599621 (-) True G454753
TU522225 lncRNA upstream 8071 1676299 ~ 1689008 (-) True G454830
TU522232 lncRNA upstream 23239 1691467 ~ 1691741 (-) True G454837
TU522235 lncRNA upstream 33912 1702140 ~ 1702371 (-) True G454840
TU522246 lncRNA upstream 54744 1722972 ~ 1723709 (-) True G454851
TU522344 lncRNA upstream 200761 1868989 ~ 1869218 (-) True G454942
CI01000320_01453536_01456193.mRNA mRNA downstream 211637 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 237260 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 271815 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 321047 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 324640 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 51078 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 227596 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 245076 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 328130 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 386183 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 237261 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 237261 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 237261 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 326698 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 526034 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1975009 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1975009 3643237 ~ 3648040 (-) True G456317

Expression Profile