RNA id: TU522214


Basic Information

Item Value
RNA id TU522214
length 203
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G454823
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1655947 ~ 1656149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTAATCCTCCGAAACAAGTTTGCAGCACAAGTCACGAACAGAAATGCTATTTTCATATTAAGTAGATGAGTAAACTGCATTCAATAAATTCGACTAAAAACATGTATTGATATGACAATTGAATACAACAGATTTAAAACATTAATGCCACGATTTTAATATTAATACATGGGAATTCATATAGGCTACATTCACACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522195 lncRNA downstream 21308 1629238 ~ 1634639 (-) True G454817
TU522115 lncRNA downstream 56326 1596825 ~ 1599621 (-) True G454753
TU522120 lncRNA downstream 69052 1585823 ~ 1586895 (-) True G454758
TU522158 lncRNA downstream 85143 1568940 ~ 1570804 (-) True G454787
TU522151 lncRNA downstream 89636 1561662 ~ 1566311 (-) True G454780
TU522215 lncRNA upstream 7390 1663539 ~ 1663785 (-) True G454824
TU522216 lncRNA upstream 8215 1664364 ~ 1664563 (-) True G454825
TU522218 lncRNA upstream 11765 1667914 ~ 1668228 (-) False G454826
TU522219 lncRNA upstream 11765 1667914 ~ 1668228 (-) True G454826
TU522225 lncRNA upstream 20150 1676299 ~ 1689008 (-) True G454830
CI01000320_01453536_01456193.mRNA mRNA downstream 199670 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 225293 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 259848 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 309080 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 312673 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 63157 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 239675 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 257155 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 340209 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 398262 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 225294 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 225294 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 225294 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 314731 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 514067 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1987088 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1987088 3643237 ~ 3648040 (-) True G456317

Expression Profile