RNA id: CI01000320_01394827_01394991.mRNA


Basic Information

Item Value
RNA id CI01000320_01394827_01394991.mRNA
length 1302
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000320_01394827_01394991
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1394798 ~ 1396099 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTCCTATCATAATTTCTCAAGCAAAGATATGATGTTTTTACCATAGATAATGTTTTCAATCGAAAACATATTGGTGAATCTCACAAAGATATATGCATTTTCACTTATTTTAATTTCATTTTCACAAATAGGCCTATTTTTCGCACTGTGACACACAATAATAAAATCAACAATAATTATATTCAGAAATACTACCATGACTTACACCATGTCCTAACTACAGCGATGCGATAAGATTCCAGCAACAAGCAATTTGACTGTCCATTTGACGCGACGCGACAATGAGAAGCGATAAAATCAATCAAAAACCACAGCCAATCAGAAGAGAGTGTGGGCGGGCTCTCTTGGCAAGAGCACAGCAGACACGATGAAATCGGTAAATACATAGTAAATTTCATAAATATTACACCATTTAAACATTATTTAAAGTACAAACGGAGTGACTGAATCAATCTTTGTCATAGAGTACACTTGTTTGTTCGCATTGAGTTGACTTGTGCCCATTTATTTATTTTCAAGATCTGAGGTAAATTAGCCAGTGTTATTTTCATTACAGCTAAAAAGCTGGGAACACAGAATTACATTCAAACTCATATTAGACGCTTTTAACATTAAATAAAGCACATAAACAGTACCTGATATTATCATTGCCATTCTTTGTGTTGCTGGAAAACTCCGATTAACATGGAAAAGATACCTTTTATCACGTCTGGTTAGGACACGGTGTTACTTATATATAATATTGATATATATTGTGAAGTAGTATATGTAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGCAGGTACTTCATTGTCATAAAAAAAATGTCACAATGCAAAAAAAAAAAAAATAAAAAAAATAAAAAATGTCTTTCTGTTATGCAAAATATTTATTTTTTTCTTTTCATAAGGTGAAATACGAATTTATTTACACAAGAAATTGCCGGTCTTTGTGAGATTCACTCAAAGACTGAATAGTCTTTTGAGAAACATATGCTGCATAAAACCATGTTATCTAAACACAAGTGCAGCACACAGGCACAACACATCAAGGATATTTCTTTTCAGTCTTACACATTTGGAAACAGTACTCAAAATATAGAGCATGAGACCCTTCAGCACAACGGCCCCAGCTTCATCTGTATCTTATCACCGTAACAGTCCCTTAAACAGAAAAAGCTGGGGAACATATGAGGAACTGAGCCAGACTGAGTCTTCAAAGAGCGAACAGGCTTCACGGAGGAGGGGTCTCGCTCAGCAGCTCTCGTAAGGGCTGGTTCTCATCATTCTGACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522048 lncRNA downstream 7572 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA downstream 7597 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA downstream 7597 1362758 ~ 1387201 (-) False G454707
TU522049 lncRNA downstream 7597 1383176 ~ 1387201 (-) False G454707
TU522050 lncRNA downstream 7597 1383176 ~ 1387201 (-) True G454707
TU522076 lncRNA upstream 283 1396382 ~ 1396614 (-) True G454722
TU522073 lncRNA upstream 38741 1434840 ~ 1441993 (-) False G454721
TU522072 lncRNA upstream 40568 1436667 ~ 1438932 (-) True G454721
TU522093 lncRNA upstream 46045 1442144 ~ 1442443 (-) True G454733
TU522098 lncRNA upstream 61645 1457744 ~ 1462005 (-) True G454738
CI01000320_01345762_01346867.mRNA mRNA downstream 47931 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 51524 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01328278_01333798.mRNA mRNA downstream 61000 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01322036_01325638.mRNA mRNA downstream 69160 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
CI01000320_01310476_01318751.mRNA mRNA downstream 76047 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01426753_01430603.mRNA mRNA upstream 30077 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01453536_01456193.mRNA mRNA upstream 57057 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01719471_01731780.mRNA mRNA upstream 323207 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 499725 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 517205 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
TU521994 other downstream 53582 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 252918 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 338903 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 866246 527059 ~ 528552 (-) False G454495
TU522089 other upstream 30684 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 30684 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 30684 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU523828 other upstream 2247138 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2247138 3643237 ~ 3648040 (-) True G456317

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030177 True 4383 lncRNA 0.38 2 NC_007130.7 14062042 ~ 14066550 (-)