RNA id: CI01000320_01322036_01325638.mRNA


Basic Information

Item Value
RNA id CI01000320_01322036_01325638.mRNA
length 1291
RNA type mRNA
GC content 0.40
exon number 10
gene id CI01000320_01322036_01325638
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1321786 ~ 1325638 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACAGCCTGTGGATGGGTAACCTGGAGCCATACATGGATGAAGAGTTCATACACAGAGCTTTTGCTCATATGGGAGAAACAGTGATGAGAGTCAGACTGATCCGAGACAAAATAACAGGAGAAACGGCAGGATATGGCTTTGTGGAGCTGATAGATGAGACATCAGTAGAGAGATGCCTTCGCAAAGTGAATGGAAAACCTTTACCTGCCAAAGAGGTTCAAGTTGAGTCGTACCACTTACGGGAAACATGGCGAAAGCCGGAATATCCCAGTCAGTCAGGGATTATCAGAATGGAAATATCCTGTGCAGTCAGGAAGTGGTCAACAGTATATAACCACAGCTCTACGTTCTCCCTCTTTGTGTCGGATCTCACCCCGGACGTGGATGATGGCATGTTATATGAGTTCTTTAATTTTCATTTTTCATCTTGCTGCAGTGGAAAGATAGTTCTGGACAGCAGTGGATACTCAAAGTGCTGTGGCTTTGTGAGCTTTGAGAGCGAGAGAGAGCAGAGACAGGCTCTGGCAGAACTCCAGGGTGCTTCTGGACTCGGGAAGAAACCTTTACGCCTCAGTCTGGCTGCAAATAAACTGAAGAAGAAAGAGTCGCCTGAAAACAAAAATTGGCAATTCCATGCAGACAACTACAACATCAATAACTCATATCTGAACCAGTACTATTACCCACAATACTCCAGCAATTCATCTACATATGTCTGGAACTATGATTACAACTACTTAAATCATTCCCAAAACATCGTACAGATGGTGTTATATTCAGTATTTTGTTTTCCTTGGTGTCTAATAAATTTGTTTTTGAAATCGCAGGGTGAAGAGATGGAAGATGATGACCTAGAGTATCCAGACTCTGAAATAAATGTGATGGAGGCAAATGAGAGATTTATGGACCAGAGTGAGGAACTTTACAGTGCTCTGATGGATTGTTTCTTCCAGCCTCCTGAATCATGGGACGGGGTCACCTGTAGTGTTACATGTTACCTACCAGAACCAATTTATCAACATGAGGATATGGACTGAGTATATGTACTCTTGTTTGTTCACATTTACTATTTGGTTGTATTACAAAGAACCCATTATTAGGGTAACCGATGATGTAGATGAAATAATTAAATAATTAATACCATTAGTTGATTTTTTTTTTTTTTTTAAGAATGCAGCTTATGCAATACTGTATGTGATTTATCATGTCACTGTAGAAGTGTATAATTGAAATTAATTCATGTTTGTTTGTTTTGCCATGTTCTTTTGGTGGGAAGTGTACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522021 lncRNA downstream 193139 1128325 ~ 1128647 (-) True G454682
TU522019 lncRNA downstream 196126 1124882 ~ 1125660 (-) True G454680
TU522016 lncRNA downstream 212947 1108535 ~ 1108839 (-) True G454677
TU521992 lncRNA downstream 311885 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 315594 1005965 ~ 1006192 (-) True G454654
TU522048 lncRNA upstream 37120 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA upstream 37120 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA upstream 37120 1362758 ~ 1387201 (-) False G454707
TU522058 lncRNA upstream 40623 1366261 ~ 1377788 (-) True G454711
TU522049 lncRNA upstream 57538 1383176 ~ 1387201 (-) False G454707
CI01000320_01310476_01318751.mRNA mRNA downstream 3035 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01263151_01266426.mRNA mRNA downstream 55360 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01207179_01217428.mRNA mRNA downstream 104348 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01176457_01181900.mRNA mRNA downstream 139886 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01042859_01043564.mRNA mRNA downstream 278222 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01328278_01333798.mRNA mRNA upstream 2612 1328250 ~ 1333798 (-) True CI01000320_01328278_01333798
CI01000320_01338270_01341123.mRNA mRNA upstream 11899 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01345762_01346867.mRNA mRNA upstream 20024 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01394827_01394991.mRNA mRNA upstream 69160 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01426753_01430603.mRNA mRNA upstream 100538 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
TU522025 other downstream 179906 1141242 ~ 1141880 (-) True G454686
TU522002 other downstream 265891 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 793234 527059 ~ 528552 (-) False G454495
TU521809 other downstream 793576 527059 ~ 528210 (-) False G454495
TU521994 other upstream 10641 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 101145 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 101145 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 101145 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU523828 other upstream 2317599 3643237 ~ 3648040 (-) False G456317

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028941 False 2479 mRNA 0.37 9 NC_007130.7 13923600 ~ 13933204 (-)