RNA id: TU522016


Basic Information

Item Value
RNA id TU522016
length 305
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G454677
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1108535 ~ 1108839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACTGAAAGTTCTCCAAGAAGTATAATGTATCTGGTGTATCTATTGTTTATTCCTTTCATGTTTGGTATCATTTTAAATGTCTCAGTGCGATTGGTAAAATGGTCTCAATTTCACAGCAGTCACTGGTATTATGAAGAAGACTGAAAACTAAGGATAATTCTGTTCTCCTTTTGGGTGTTGAAAAACCCACTCCTCTCCCCCAAAACAGGTGTTGGTGTAATAAATATTTACAACCCTTTGTTCTGGTCTGTATATAAGGTAAAGTGCAAAGCAGTCAGGGGGGACTTTCTGTAGCCAGAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521992 lncRNA downstream 98634 1009652 ~ 1009901 (-) True G454656
TU521990 lncRNA downstream 102343 1005965 ~ 1006192 (-) True G454654
TU521989 lncRNA downstream 102936 1005200 ~ 1005599 (-) True G454653
TU521988 lncRNA downstream 103402 1004823 ~ 1005133 (-) True G454652
TU521987 lncRNA downstream 104026 1004290 ~ 1004509 (-) True G454651
TU522019 lncRNA upstream 16043 1124882 ~ 1125660 (-) True G454680
TU522021 lncRNA upstream 19486 1128325 ~ 1128647 (-) True G454682
TU522048 lncRNA upstream 253919 1362758 ~ 1387226 (-) False G454707
TU522052 lncRNA upstream 253919 1362758 ~ 1387201 (-) False G454707
TU522053 lncRNA upstream 253919 1362758 ~ 1387201 (-) False G454707
CI01000320_01042859_01043564.mRNA mRNA downstream 64971 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_00935826_00945755.mRNA mRNA downstream 162780 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_00745852_00758696.mRNA mRNA downstream 349429 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00688829_00696138.mRNA mRNA downstream 412347 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 516012 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_01176457_01181900.mRNA mRNA upstream 65896 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 98340 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01263151_01266426.mRNA mRNA upstream 154200 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01310476_01318751.mRNA mRNA upstream 201505 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
CI01000320_01322036_01325638.mRNA mRNA upstream 212947 1321786 ~ 1325638 (-) True CI01000320_01322036_01325638
TU522002 other downstream 52640 1051468 ~ 1055895 (-) True G454663
TU521811 other downstream 579983 527059 ~ 528552 (-) False G454495
TU521809 other downstream 580325 527059 ~ 528210 (-) False G454495
TU521812 other downstream 580325 527059 ~ 528210 (-) False G454495
TU521676 other downstream 758333 350103 ~ 350202 (-) True G454374
TU522025 other upstream 32403 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 227440 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 317944 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 317944 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other upstream 317944 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603

Expression Profile