RNA id: TU521987


Basic Information

Item Value
RNA id TU521987
length 220
lncRNA type intronic
GC content 0.33
exon number 1
gene id G454651
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1004290 ~ 1004509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGCAAATCAGCATATTAGATTTCTGAAGGATCATGTGACACTGAAGACTGAATTGATGACTGCATGCTAACAATTCAGCTTTGCCATCAGAGAAATAAATTACACTATATGAATAATAATAATAACATTTCACAATATTTCTGGTTGTACTGTACAATTGTTTTAGAAGCTTATGAGGTGATCCAAATCCAAAAAAATGACACAAATGTGATCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521986 lncRNA downstream 1573 1002489 ~ 1002717 (-) True G454650
TU521985 lncRNA downstream 21446 982583 ~ 982844 (-) True G454649
TU521975 lncRNA downstream 77981 926064 ~ 926309 (-) True G454639
TU521944 lncRNA downstream 136999 860461 ~ 867291 (-) True G454615
TU521942 lncRNA downstream 142633 849157 ~ 861657 (-) False G454615
TU521988 lncRNA upstream 314 1004823 ~ 1005133 (-) True G454652
TU521989 lncRNA upstream 691 1005200 ~ 1005599 (-) True G454653
TU521990 lncRNA upstream 1456 1005965 ~ 1006192 (-) True G454654
TU521992 lncRNA upstream 5143 1009652 ~ 1009901 (-) True G454656
TU522016 lncRNA upstream 104026 1108535 ~ 1108839 (-) True G454677
CI01000320_00935826_00945755.mRNA mRNA downstream 58535 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_00745852_00758696.mRNA mRNA downstream 245184 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00688829_00696138.mRNA mRNA downstream 308102 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 411767 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00442550_00456381.mRNA mRNA downstream 547903 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_01042859_01043564.mRNA mRNA upstream 37515 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01176457_01181900.mRNA mRNA upstream 170226 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 202670 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01263151_01266426.mRNA mRNA upstream 258530 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
CI01000320_01310476_01318751.mRNA mRNA upstream 305835 1310344 ~ 1318751 (-) True CI01000320_01310476_01318751
TU521811 other downstream 475738 527059 ~ 528552 (-) False G454495
TU521809 other downstream 476080 527059 ~ 528210 (-) False G454495
TU521812 other downstream 476080 527059 ~ 528210 (-) False G454495
TU521676 other downstream 654088 350103 ~ 350202 (-) True G454374
TU522002 other upstream 46959 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 136733 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 331770 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 422274 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 422274 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile