RNA id: TU521975


Basic Information

Item Value
RNA id TU521975
length 246
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G454639
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 926064 ~ 926309 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAACTTTTCCGGCCTCTTATTGCTACCTGTCCCAACTTTTTTGGAATGTGTAGCTCTCATGAAATCCAAAATGAGCCAATATTTGGCATGACATTTCAAAATGTCTCACTTTCAACATTTGATATGTTATCTATATTCTATTGTGAATAAAATATAAGTTTATGAGATTTGTAAATTATTGCATTCCTTTTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTGGAATCGGGTTTGTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521944 lncRNA downstream 58773 860461 ~ 867291 (-) True G454615
TU521942 lncRNA downstream 64407 849157 ~ 861657 (-) False G454615
TU521919 lncRNA downstream 190158 733458 ~ 735906 (-) True G454593
TU521864 lncRNA downstream 196697 650216 ~ 729367 (-) False G454545
TU521985 lncRNA upstream 56274 982583 ~ 982844 (-) True G454649
TU521986 lncRNA upstream 76180 1002489 ~ 1002717 (-) True G454650
TU521987 lncRNA upstream 77981 1004290 ~ 1004509 (-) True G454651
TU521988 lncRNA upstream 78514 1004823 ~ 1005133 (-) True G454652
TU521989 lncRNA upstream 78891 1005200 ~ 1005599 (-) True G454653
CI01000320_00745852_00758696.mRNA mRNA downstream 166958 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00688829_00696138.mRNA mRNA downstream 229876 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 333541 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00442550_00456381.mRNA mRNA downstream 469677 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 502894 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00935826_00945755.mRNA mRNA upstream 8123 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 115715 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01176457_01181900.mRNA mRNA upstream 248426 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 280870 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01263151_01266426.mRNA mRNA upstream 336730 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
TU521811 other downstream 397512 527059 ~ 528552 (-) False G454495
TU521809 other downstream 397854 527059 ~ 528210 (-) False G454495
TU521812 other downstream 397854 527059 ~ 528210 (-) False G454495
TU521676 other downstream 575862 350103 ~ 350202 (-) True G454374
TU522002 other upstream 125159 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 214933 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 409970 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 500474 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 500474 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile