Gene
RNA
| Item | Value |
|---|---|
| gene id | G454649 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000320 |
| NCBI id | null |
| chromosome length | 3894707 |
| location | 982583 ~ 982844 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| hypothetical protein EH28_24508, partial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU521985 | True | 262 | lncRNA | 0.49 | 1 | 982583 | 982844 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000320_00935826_00945755 | LRP12 | coding | downstream | 36828 | 934432 ~ 945755 (-) |
| CI01000320_00745852_00758696 | SLC25A32A, SLC25A32 | coding | downstream | 223477 | 745030 ~ 759106 (-) |
| CI01000320_00688829_00696138 | NA | coding | downstream | 286395 | 688688 ~ 696188 (-) |
| CI01000320_00586900_00592523 | FAM210AA | coding | downstream | 390060 | 585993 ~ 592523 (-) |
| CI01000320_00442550_00456381 | PTPN2B | coding | downstream | 526196 | 442124 ~ 456387 (-) |
| CI01000320_01042859_01043564 | NA | coding | upstream | 59180 | 1042024 ~ 1043564 (-) |
| CI01000320_01176457_01181900 | NA | coding | upstream | 191891 | 1174735 ~ 1181900 (-) |
| CI01000320_01207179_01217428 | EPB41 | coding | upstream | 224335 | 1207179 ~ 1217438 (-) |
| CI01000320_01263151_01266426 | CTGFB | coding | upstream | 280195 | 1263039 ~ 1266426 (-) |
| CI01000320_01310476_01318751 | STX12 | coding | upstream | 327500 | 1310344 ~ 1318751 (-) |
| G454639 | NA | non-coding | downstream | 56274 | 926064 ~ 926309 (-) |
| G454615 | NA | non-coding | downstream | 115292 | 849157 ~ 867291 (-) |
| G454593 | NA | non-coding | downstream | 246677 | 733458 ~ 735906 (-) |
| G454545 | NA | non-coding | downstream | 253216 | 650216 ~ 729367 (-) |
| G454650 | NA | non-coding | upstream | 19645 | 1002489 ~ 1002717 (-) |
| G454651 | NA | non-coding | upstream | 21446 | 1004290 ~ 1004509 (-) |
| G454652 | NA | non-coding | upstream | 21979 | 1004823 ~ 1005133 (-) |
| G454653 | NA | non-coding | upstream | 22356 | 1005200 ~ 1005599 (-) |
| G454654 | NA | non-coding | upstream | 23121 | 1005965 ~ 1006192 (-) |
| G454495 | NA | other | downstream | 454031 | 527059 ~ 528552 (-) |
| CI01000320_00346954_00349228 | ZNF706.2.S, ZNF706.2.L, ZNF706, ZNF706.2 | other | downstream | 632381 | 346199 ~ 349445 (-) |
| G454663 | NA | other | upstream | 68624 | 1051468 ~ 1055895 (-) |
| G454686 | NA | other | upstream | 158398 | 1141242 ~ 1141880 (-) |
| CI01000320_01338270_01341123 | SH3BGRL3 | other | upstream | 353435 | 1336279 ~ 1343274 (-) |
| CI01000320_01426753_01430603 | NA | other | upstream | 443939 | 1426176 ~ 1430654 (-) |
| G456317 | NA | other | upstream | 2660393 | 3643237 ~ 3648040 (-) |
