RNA id: TU521944


Basic Information

Item Value
RNA id TU521944
length 641
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G454615
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 849157 ~ 867291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGAAATCCCTGCCATTGTGCCGGTAATCTGAGATAACACCAATCCCATCTTCACAGTCGTAATCAGAGAACTCGCTGTCACTGATTCTCTGTGACCTTTGTAACCTGCGCGTTGGACTCTCTCCATGTAGGAGACGTCTCTGCATGTAGGGTGAGGGGTTAGGCAGCGGCATAGAGGACACGTCATGTGTTTGGAGCTTATACCAATGAGGCTGATCGTCCAACAGCGCTGTCTCCAGCTCTATCAGAATCTCTCCCAGGAACTCGCTTTCTTCCTCTCGGACTCTGGCCTGGTCCCATAGCGTGATCTCCAGCATACGCTCCCTGAACTCTCGCCTGTGCACTGGCGAGTACATGAACGTCTGGTTCCACTTTGGCTCCAGAGATTTCTTCACTGTTTTCGTTCTCCTCTTGCTTTTATCACTGAGAAGAGCAGGTGAGTTCATATTTTACAGCTGCTGATATGACTCAAACTTGAGGGGTTTTAACATTTACAGTCTCACAGACCCTCACAAAGACACTAAGCCAATCCAGGGATCCCCAAATCCAAGATGTTCATGTCTTTCTTTCTTCAGTCGAAAAGAAATTAAGGTTTTTGAGGAAAACATTCCAGTATTGCTCTCCATATAGTGGACTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521919 lncRNA downstream 124555 733458 ~ 735906 (-) True G454593
TU521864 lncRNA downstream 131094 650216 ~ 729367 (-) False G454545
TU521975 lncRNA upstream 58773 926064 ~ 926309 (-) True G454639
TU521985 lncRNA upstream 115292 982583 ~ 982844 (-) True G454649
TU521986 lncRNA upstream 135198 1002489 ~ 1002717 (-) True G454650
TU521987 lncRNA upstream 136999 1004290 ~ 1004509 (-) True G454651
TU521988 lncRNA upstream 137532 1004823 ~ 1005133 (-) True G454652
CI01000320_00745852_00758696.mRNA mRNA downstream 101355 745030 ~ 759106 (-) True CI01000320_00745852_00758696
CI01000320_00688829_00696138.mRNA mRNA downstream 164273 688688 ~ 696188 (-) True CI01000320_00688829_00696138
CI01000320_00586900_00592523.mRNA mRNA downstream 267938 585993 ~ 592523 (-) True CI01000320_00586900_00592523
CI01000320_00442550_00456381.mRNA mRNA downstream 404074 442124 ~ 456387 (-) True CI01000320_00442550_00456381
CI01000320_00420198_00423170.mRNA mRNA downstream 437291 419963 ~ 423170 (-) True CI01000320_00420198_00423170
CI01000320_00935826_00945755.mRNA mRNA upstream 67141 934432 ~ 945755 (-) True CI01000320_00935826_00945755
CI01000320_01042859_01043564.mRNA mRNA upstream 174733 1042024 ~ 1043564 (-) True CI01000320_01042859_01043564
CI01000320_01176457_01181900.mRNA mRNA upstream 307444 1174735 ~ 1181900 (-) True CI01000320_01176457_01181900
CI01000320_01207179_01217428.mRNA mRNA upstream 339888 1207179 ~ 1217438 (-) True CI01000320_01207179_01217428
CI01000320_01263151_01266426.mRNA mRNA upstream 395748 1263039 ~ 1266426 (-) True CI01000320_01263151_01266426
TU521811 other downstream 331909 527059 ~ 528552 (-) False G454495
TU521809 other downstream 332251 527059 ~ 528210 (-) False G454495
TU521812 other downstream 332251 527059 ~ 528210 (-) False G454495
TU521676 other downstream 510259 350103 ~ 350202 (-) True G454374
TU522002 other upstream 184177 1051468 ~ 1055895 (-) True G454663
TU522025 other upstream 273951 1141242 ~ 1141880 (-) True G454686
TU521994 other upstream 468988 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522089 other upstream 559492 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other upstream 559492 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile