RNA id: TU523828


Basic Information

Item Value
RNA id TU523828
length 743
RNA type TUCP
GC content 0.54
exon number 4
gene id G456317
representative False

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3643237 ~ 3648040 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTCTGTTCATCTCCAACCTCAAAATAAAGACACATGACATGACCATACAAAGGTACTTTATTTGGATAAATGTACAGTTGTAGCACACATCGTTTAGCGATAACGGTGCAGCTGCAGGGTGTTGCGTCTCTTCCAGGCTGCACGTCGAGAGCCGCCGATGGTGAGGTGGAACTTGTGGCCCTTGCCCAGACCACGGCTCTTCTTGCCAGCAGATGTGAGCCCACGCATTTCCCTGTGCTTGTGCACAGCCTTGGTGATCCATTGCGTGTCGGGGTTGCGTCTGATGGCTTTGTGGAAGGTGTCAATGAGGATCACTTCAAAGAACTTGTATGTGGAATCTTCACCCACCCAGTAGGAGTTTAGCACCCGCAGACCTCCGCAATGACGACCGGCACGCTCTCAGCTACTGACTGCAGACTGCGTGCGAACTTGATCTGGTTGACGCCATGGTGCACAGGTTTGCCGTAGGTGGCACCTTTGGGCACGGGGCGCTTGCGACCTCCACGACGCACACGTATACGGTAGATGACGTAGCCTGTTTGGCCTTGTATCCCAGTCTGCGGGCTTTATCGGGTCTAGTGGGTCTTGGAGCCCGGTGAAGGGAGGACAGCTGACGGTACTGCCAGCACCGCACACGGAGCAGAAATCTCATCACGTCTGACTGCTTCTTCCTCCATAACTCCTGCATGTACTTGTACGCTCCCATGATGCCTCACCTGTAACACTTGATGGCGTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523837 lncRNA downstream 4530 3637521 ~ 3638707 (-) True G456324
TU523860 lncRNA downstream 34836 3608123 ~ 3608401 (-) True G456343
TU523859 lncRNA downstream 35311 3607708 ~ 3607926 (-) True G456342
TU523857 lncRNA downstream 36731 3606231 ~ 3606506 (-) True G456340
TU523856 lncRNA downstream 37253 3605592 ~ 3605984 (-) True G456339
TU523873 lncRNA upstream 687 3648727 ~ 3649150 (-) True G456356
TU523876 lncRNA upstream 4303 3652343 ~ 3652619 (-) True G456359
TU523880 lncRNA upstream 24811 3672851 ~ 3673077 (-) True G456363
TU523881 lncRNA upstream 25496 3673536 ~ 3673762 (-) True G456364
TU523888 lncRNA upstream 36385 3684425 ~ 3684713 (-) True G456371
CI01000320_03639518_03642111.mRNA mRNA downstream 1126 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03564239_03566141.mRNA mRNA downstream 76252 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03536880_03548445.mRNA mRNA downstream 94762 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03521826_03531909.mRNA mRNA downstream 111328 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03456251_03458846.mRNA mRNA downstream 184391 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
CI01000320_03825336_03853470.mRNA mRNA upstream 176623 3824663 ~ 3853686 (-) True CI01000320_03825336_03853470
TU522089 other downstream 2212584 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 2212584 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 2212584 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 2302021 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 2501357 1141242 ~ 1141880 (-) True G454686

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU109455 False 824 lncRNA 0.54 4 CM030130.1 25412404 ~ 25415088 (-)