RNA id: TU523856


Basic Information

Item Value
RNA id TU523856
length 393
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G456339
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3605592 ~ 3605984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTTTGTCTTGTCGATTATATGTAAACATCTTTTATGTAAAATCTTACTCAGGACAGTACTAAATAAAAAAATAACATGCATTTTGTATTATCTCCCTTATTTTGTTAAAATTATTAACATTTTCACAGATTCTGCAAGTGGTTCACATACTTTTTCTTGCCACTGTGATATATTATATAAAAAAAAAAAATAAAAAAAATAAAAAAAACCCACGCAGAACGTGGGTGCTGGCTGACAGTCAGCTGTAGTTCTCTCGGTGTGTTCACGTGCAGTTCTTCCTCCCCCCTCCCAGTTCGGTGTTTCAGGTGTTCAAGTCAAGGAAGGAGAGATGATAAAGTTGGTTGGGGCAATGGGTGGGGGTCAGCGTCTATGTGGCGTAGCGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523849 lncRNA downstream 21560 3583833 ~ 3584032 (-) True G456332
TU523844 lncRNA downstream 60626 3544063 ~ 3544966 (-) True G456327
TU523841 lncRNA downstream 67817 3536128 ~ 3537775 (-) True CI01000320_03536880_03548445
TU523839 lncRNA downstream 67843 3535246 ~ 3537749 (-) False CI01000320_03536880_03548445
TU523824 lncRNA downstream 72332 3533040 ~ 3533260 (-) True G456316
TU523857 lncRNA upstream 247 3606231 ~ 3606506 (-) True G456340
TU523859 lncRNA upstream 1724 3607708 ~ 3607926 (-) True G456342
TU523860 lncRNA upstream 2139 3608123 ~ 3608401 (-) True G456343
TU523837 lncRNA upstream 31537 3637521 ~ 3638707 (-) True G456324
TU523873 lncRNA upstream 42743 3648727 ~ 3649150 (-) True G456356
CI01000320_03564239_03566141.mRNA mRNA downstream 38607 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03536880_03548445.mRNA mRNA downstream 57117 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03521826_03531909.mRNA mRNA downstream 73683 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03456251_03458846.mRNA mRNA downstream 146746 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
CI01000320_03338747_03341584.mRNA mRNA downstream 264008 3338681 ~ 3341584 (-) False CI01000320_03338747_03341584
CI01000320_03639518_03642111.mRNA mRNA upstream 33411 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03825336_03853470.mRNA mRNA upstream 218679 3824663 ~ 3853686 (-) True CI01000320_03825336_03853470
TU522089 other downstream 2174939 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 2174939 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 2174939 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 2264376 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 2463712 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 37253 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 37253 3643237 ~ 3648040 (-) True G456317

Expression Profile