RNA id: TU523860


Basic Information

Item Value
RNA id TU523860
length 279
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G456343
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3608123 ~ 3608401 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTAGTTGACTCATATTCGGGATGGTTCGAAATCGATCTGCTTCGTGACCTGTCCTCCAGTACAGTAATCACAAAACTCAAAAGGCACTTCTCTGTTCATGGGAGTCCGCACAAAGTCTTTTCAGACAACGGTACCCAGTTTATAAGCCAACAGTTCAAAGAATTTGCTGCTGCCTGGGATTTTACACATACCACTAGTAGCCCTGAATATCCACAAGCTAACGGGCTAGCCGAGAGGGCAGTGCGGAGTGCAAAACATCTAAATGGAGAAATCCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523859 lncRNA downstream 197 3607708 ~ 3607926 (-) True G456342
TU523857 lncRNA downstream 1617 3606231 ~ 3606506 (-) True G456340
TU523856 lncRNA downstream 2139 3605592 ~ 3605984 (-) True G456339
TU523849 lncRNA downstream 24091 3583833 ~ 3584032 (-) True G456332
TU523844 lncRNA downstream 63157 3544063 ~ 3544966 (-) True G456327
TU523837 lncRNA upstream 29120 3637521 ~ 3638707 (-) True G456324
TU523873 lncRNA upstream 40326 3648727 ~ 3649150 (-) True G456356
TU523876 lncRNA upstream 43942 3652343 ~ 3652619 (-) True G456359
TU523880 lncRNA upstream 64450 3672851 ~ 3673077 (-) True G456363
TU523881 lncRNA upstream 65135 3673536 ~ 3673762 (-) True G456364
CI01000320_03564239_03566141.mRNA mRNA downstream 41138 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03536880_03548445.mRNA mRNA downstream 59648 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03521826_03531909.mRNA mRNA downstream 76214 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03456251_03458846.mRNA mRNA downstream 149277 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
CI01000320_03338747_03341584.mRNA mRNA downstream 266539 3338681 ~ 3341584 (-) False CI01000320_03338747_03341584
CI01000320_03639518_03642111.mRNA mRNA upstream 30994 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03825336_03853470.mRNA mRNA upstream 216262 3824663 ~ 3853686 (-) True CI01000320_03825336_03853470
TU522089 other downstream 2177470 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 2177470 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 2177470 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 2266907 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 2466243 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 34836 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 34836 3643237 ~ 3648040 (-) True G456317

Expression Profile