RNA id: TU523881


Basic Information

Item Value
RNA id TU523881
length 227
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G456364
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3673536 ~ 3673762 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCAGCAAGCCTAGTGCAGATCCTGAGAAACCCGAGTGCATTGCCTGTTGGGCTTAGTATACCTGCCTGGCCATCGCTGGTATCCTCTGGCCTCATTCTCCTCTCCAATACTGCTCTCCAGCCTACCGTCATCTTGATCGTTACAGCGGCTGCGCTTCCTGGCCTGCTTGCCTGTTATTGTGTCCCATACCTGCCCATTGTTTGGACTGTGTTCCTCTCTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523880 lncRNA downstream 459 3672851 ~ 3673077 (-) True G456363
TU523876 lncRNA downstream 20917 3652343 ~ 3652619 (-) True G456359
TU523873 lncRNA downstream 24386 3648727 ~ 3649150 (-) True G456356
TU523837 lncRNA downstream 34829 3637521 ~ 3638707 (-) True G456324
TU523860 lncRNA downstream 65135 3608123 ~ 3608401 (-) True G456343
TU523888 lncRNA upstream 10663 3684425 ~ 3684713 (-) True G456371
TU523904 lncRNA upstream 40928 3714690 ~ 3714933 (-) True G456384
TU523918 lncRNA upstream 66902 3740664 ~ 3747800 (-) True G456398
TU523927 lncRNA upstream 77141 3750903 ~ 3751339 (-) True G456406
TU524004 lncRNA upstream 174199 3847961 ~ 3865238 (-) True G456467
CI01000320_03639518_03642111.mRNA mRNA downstream 31425 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03564239_03566141.mRNA mRNA downstream 106551 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03536880_03548445.mRNA mRNA downstream 125061 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03521826_03531909.mRNA mRNA downstream 141627 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03456251_03458846.mRNA mRNA downstream 214690 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
CI01000320_03825336_03853470.mRNA mRNA upstream 150901 3824663 ~ 3853686 (-) True CI01000320_03825336_03853470
TU523828 other downstream 25496 3643237 ~ 3648040 (-) False G456317
TU523830 other downstream 25496 3643237 ~ 3648040 (-) True G456317
TU522089 other downstream 2242883 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603

Expression Profile