CI01000320_03639518_03642111 (NKIRAS1)


Basic Information

Item Value
gene id CI01000320_03639518_03642111
gene name NKIRAS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3639395 ~ 3642111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000320_03639518_03642111.mRNA
GGCAGGTAACTATGGGTAAGGGTTGTAAGGTTGTGGTTTGTGGTATGGCATCTGTGGGGAAAACAGCCATCCTGGAGCAGTTACTGTATGGCACTCACACTGCAGGTGCAGAAACAAACGACACTCAGGAGGATATATATGTGGCCTCTGTCGAGACGGACCGTGGTGTGAGAGAGCAGTTACGTCTCTATGACACAAGAGGGCTGCGTGAGGGACTGGACTTACCCAAACACTTCTTCTCTGTGGCCGACGGCTTTGTGCTGGTCTACAGTGTGGACAGTCTGGAGTCATTCAAAAAAGTGATGGTGATCGTGTTGGGGAACAAGTGTGACCTGCGGGAACGTCGACAGGTGGACCAGGATGCTGCCCAGCAGTGGGCACGTGGGGAGAAGGTCAAACTTTGGGAGGTGACCGTGACAGACAGAAGCTCATTAATCGAACCCTTCACCAGTCTCACCAGCCGCCTCACACAGCCACAAAGCAAGTCTGCCTTCCCTCTGCCTGGCCGCAAGAGCAAGGGAACCCCCTCCAACGACATCTGAACACCGCACACTGCCACAGTTTCAGCACTATGTTTGGTTGTCTATACTTCTTTCAGGGTACTTAAGATGTTTAAGGGCTTCTAGAGAAAGAGCTAGGACTAGATCTATTTAAACATAAATAAA

Function

symbol description
nkiras1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm. Orthologous to human NKIRAS1 (NFKB inhibitor interacting Ras like 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000320_03639518_03642111.mRNA True 665 mRNA 0.51 3 3639395 3642111

Neighbor

gene id symbol gene type direction distance location
CI01000320_03564239_03566141 NA coding downstream 72410 3563774 ~ 3566985 (-)
CI01000320_03536880_03548445 NA coding downstream 90920 3535246 ~ 3548475 (-)
CI01000320_03521826_03531909 FHL3, SF3A3.S, SF3A3 coding downstream 107486 3521600 ~ 3531909 (-)
CI01000320_03456251_03458846 STMN1, STMN1A, STMN1B coding downstream 180549 3456131 ~ 3458846 (-)
CI01000320_03338747_03341584 NA coding downstream 297811 3338681 ~ 3342213 (-)
CI01000320_03825336_03853470 NA coding upstream 182552 3824663 ~ 3853686 (-)
G456324 NA non-coding downstream 688 3637521 ~ 3638707 (-)
G456343 NA non-coding downstream 30994 3608123 ~ 3608401 (-)
G456342 NA non-coding downstream 31469 3607708 ~ 3607926 (-)
G456340 NA non-coding downstream 32889 3606231 ~ 3606506 (-)
G456339 NA non-coding downstream 33411 3605592 ~ 3605984 (-)
G456356 NA non-coding upstream 6616 3648727 ~ 3649150 (-)
G456359 NA non-coding upstream 10232 3652343 ~ 3652619 (-)
G456363 NA non-coding upstream 30740 3672851 ~ 3673077 (-)
G456364 NA non-coding upstream 31425 3673536 ~ 3673762 (-)
G456371 NA non-coding upstream 42314 3684425 ~ 3684713 (-)
CI01000320_01426753_01430603 NA other downstream 2208742 1426176 ~ 1430654 (-)
CI01000320_01338270_01341123 SH3BGRL3 other downstream 2298179 1336279 ~ 1343274 (-)
G454686 NA other downstream 2497515 1141242 ~ 1141880 (-)
G454663 NA other downstream 2583500 1051468 ~ 1055895 (-)
G454495 NA other downstream 3110843 527059 ~ 528552 (-)
G456317 NA other upstream 1126 3643237 ~ 3648040 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014674 nkiras1 coding NC_007130.7 CM002903.2 17377346 ~ 17385548 (-)