RNA id: CI01000320_03825336_03853470.mRNA


Basic Information

Item Value
RNA id CI01000320_03825336_03853470.mRNA
length 2476
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000320_03825336_03853470
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3824663 ~ 3853686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGACTCTAATGGCAGACGTTTCACAAAAAGGGGACAGAGCCATCATCACTAATCTGCTCCTCTACACAACAGACTGTAATGTTTGGTAATCTGTAAATATTACAAAAGTTACAGAAAACTGGGCATCTGTAATGGCAGACAAATTCAAATTTATGAAGAAAATGACACTAACAAGGCATTTCTAACTGTAAACATCTACCATAATGGAACCATAATGTTCCAGGGGACTGAAGCATGCCTCAGCTCTGTCCAGGCAAACTTTACCAGCCTAAAAGCTCTGGCAGAGGCTGAGAAAGGAGCTGCAGGAGACTGTGAAGCCCAGAGCTCAAGAGAGGGGCTGGAGGGGACGGAGCCTAACCCTGCTGACTGTGATTCACAGCTGGAGCAGTCTGTCATTCAGACCAGAAACAGTCTCTCCCTACAAGAGGTAGAGATGGTGGAGCTCAGGGAACTAACACTCTCCCATGCAACATCCATTGAGCGCTTACAACACCTGGAAAATAAACTCAGTCAACTCACACAAGACTTTGAAGCTACTGTTAAGGAGTTAAGAGGAGACATACAAAAACTGCAGCAGGACAGAGAGACCCTGAATAATGCCATAAAACAACTGATCAGGGAAAATTTCGGTGAACCCAGCCACATCATCATCCATGTGGGCACGAATGACCTGAGGGCACAACAAGAGCGAGTGGCAGAATCAGTAACACGGGTGGCCATTAAAGCAACACAAACCTTCCCAACTTCAAAAGTAGTTATCTTCACCATCCTTCTCAGATCAAACTTCCATCCTCGCACCATACAAAAAGTAAACACAGATATCTCACGTAGATGTGCTGAAATGCCAAATGTTCACCTGGCACATAATCCCACACTGGACCTCCACCATTTCCATGACCACGTCCACCTCCATAAAGACAGTGTTCATATGTTTGCTAAAACCCTTAAAGACGTGGCCCTGGGCCGAACCCCTGGCAGCCTCCCAAAAAACACCAGAGCAGCCACTACCCCTCAGCCAGCGAGACGCTTTCTTCACGCAACACCACAAAACATTGTCTCTTCACACTCAGCTCACTCTACAGCCCTTTCCCAGAGGCCTGCACCCTATCACCAACTCACTGAACCCCCATCATCCCGCCACCCACATCCTGCCCCCTACATCTGCATCCTGGACCCCACTGCCCATCGCCTGGACCTCTACACCCTGCTCTCTACCACCATCAGCCTACACCACAGCAACAACACCCTGCACCACAGGACCCTTTCTTCTGGCACCACAACCAAAAAAGACCCAGAGCAGCTCCAGCGAGGAACAACAGCATCTCAGCAGAACAGTGGCCCGTTCAAAGAAGTCCTGGTAATCATGACTTTAACCCCAAAACAGAAATGTTTTATGACAGATTTTCTTGGAAGAGCCACAGAGCCAAACTATGACTTATTCACTAAAACAGGCAAGCAAAGACAAAAACAAACAGTACATCAGGCCACCGATACTGTGCACACCCTGGTAGAAGTGAAAACAGCAATAAAGCTGATGAAAAATGGTAAATCAACTGGTATCGATGGGGTGATGGCAGAGGCACTCAAAGCAGTTGGAGAAATTGTGATCCAAAGACTGCACTCACTGTTTCAGCTTGTTTGGCATTCTGAGGAAATTCCCACTGGGTGGAAGCATGCAATCATTGTCCCAATTAGGAAAAAAGGTGACAGTCATGAGTGTAAGAATTACAGCGGCATCAGCCTACTTTCAATTGTTGGAAAGGTCTTCATGCGCATTGTGCAACTGCGACTGATGGAATAACAATAGCATATACTGGCCAGCGCTATGGAAAGTGCTTAAAAGTGAAAATGTGCCTGCGAAAATAATACGCCTACTCCAAACAATGTACAGCAATTCCAACAGCTGCGTTTGCATCCACAGTGAGCTCTCGGATGAGTTTTCTGTTCGATCTGGAGTACGGCAATGTTGCGTGGTTTCACCCTTACTGTTTAATGCAGTCATCGACTCAATCATGAAGACAATCTTCTAGAGCAGGCCGGGTGTCCAGTTTGGAGATGTTGACTTCATAACCGATCTAATGTTCGCTGATGTGCCGTATTCGCAAATGATAACGCAGAGGCCACTGATATTCTTTATGATATCGCCAGTACAGCCAAACCGGATGGATTAACCATCTATATTGACAAAACTAAAGTCATGACAATGGATAGTTCACTGGTTGCTGTTTACCTTAACTCCATCCAAATCGAACAAGTTAGTGAATTCAAGGACTTTGGCTTGTTAGTGCAGGAAAAGACAGTGACATCAACGGCAGAAGTCTACAGTAGAATTGGGCTAGTTTCCGCCGCTTCGAATGGTGCTTATGGAGGAAGAATGATGTCATGGTCAAAACAAAAATTTGGATTTTTTCGGACACGTATCTTACCAGTATTACTATATGGATCTAAAACATGGACAAGCAGATTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523927 lncRNA downstream 73324 3750903 ~ 3751339 (-) True G456406
TU523918 lncRNA downstream 76863 3740664 ~ 3747800 (-) True G456398
TU523904 lncRNA downstream 109730 3714690 ~ 3714933 (-) True G456384
TU523888 lncRNA downstream 139950 3684425 ~ 3684713 (-) True G456371
TU523881 lncRNA downstream 150901 3673536 ~ 3673762 (-) True G456364
TU524020 lncRNA upstream 14619 3868305 ~ 3873649 (-) True G456483
TU524027 lncRNA upstream 26867 3880553 ~ 3882435 (-) True G456490
CI01000320_03639518_03642111.mRNA mRNA downstream 182552 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03564239_03566141.mRNA mRNA downstream 257678 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03536880_03548445.mRNA mRNA downstream 276188 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03521826_03531909.mRNA mRNA downstream 292754 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03456251_03458846.mRNA mRNA downstream 365817 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
TU523828 other downstream 176623 3643237 ~ 3648040 (-) False G456317
TU523830 other downstream 176623 3643237 ~ 3648040 (-) True G456317
TU522089 other downstream 2394010 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 2394010 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 2394010 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603

Expression Profile