RNA id: TU522098


Basic Information

Item Value
RNA id TU522098
length 4234
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G454738
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1457744 ~ 1462005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCATTTATTGACAAAATTTCTCAGTACATTATGATAAAGAGGTCATTTATAAATTATGTGAGACACAAAAACAATGAAAATACAATTTTATATTACCTAAAATAATTATAACCTGGTTTAAAACAACCATCAGAATGCAAAACTTTTCAAAGGAGTAAAAAGATCTAATGAGTTGTTATCACTGTGTCTTTGTTGCTGGGCAACCTGACCTTGGAGTGTGCTGTAAATCAGTGCGTTGTCACCCTCTCTGCCTGACCTGTGTGCTCAAACCAGCTAACACTGAAGTGAGATGGAGAGCCATGTATCCATGCCAGCTTGCTTTAATATTAGACATAAAGAAAACTGTTCACTAAATATAGTGAACCATTCAGCATTGTTGTTGAAGCTTCATTACGCAGAATCTGATTTCACCAAATACAACATGTTCGACATCTTTGTTGATCCTGGAACAACATTCCAATCAACCAATCAGATACGAAGGACAAGTTTACAGTTTATGTCAAGTTTAGGCTTACAACCAGGGTTAGGTGCTTCAACATCAGTGTTATTCACCTATCAATTTTCTCTGATTTTAGGGATAACTTATTTGAAGGGGTAGGTTTAGGAGTAAGAATATGGTTAGGATTACATTTTCGGACAGGAAAGTTGGTCCAGGATCAACAAAATGTTTACCCAGAACATGCCTTCATTACATAATCATATTTTATGAGTAACTTGTTCATATTATAGAGTAAATATCAATAATTTGATCACATAGTATTATTATTATCATGGTGTGAAAGAGCTTGTAGCCACATTTTGCTTTTAAAATAAATTATAGAAAAAACAGTGAAAAATAATACAATAGTAATAGTAAGAAAGAAAAAGTAATGTATATTGCATTATATTATGTATAAAATTGTATGCATATAGTGTATACAAGATGTAACATAGACTACTACATACAAAGTTAGGGGTCTGAAATCATTTTTTAAAAGAAATGTATAGTTTTATTCAGCATGGGCACATTAAATTGATCTAAAGTGACAGTAAAGACATTTATAATGTTACAAAAGTTTTTAAATAAATGCTACAACTTTCTATTTATCAAAGAATCTTGAAGAAAGTGTATCATGGTTTCCACACAAAAAATTAAGCAGCACAACTGTTTTTAACATTGATAATAATAAGAAATGTTTTTTTTTTTTTTGAGCAGCAAATCAGCATATTAGAATTGAGCATTACTGTAGCTGTGCACATCTGAAATCACCGTCATCAAGAATTTTTTGTAATGTTTAATTGACAAAATGAAAAAAGAAAAAAAAAAACACTCCTGATTAGACCAGTTTAAAGAAACTATGATTTTCTCTCACAGCTTTCTCTGCAGGCTGTTGACTGTTTCTTCAGCTCTCACCTCACTGTGTCCCTACAGGATAAAGTTCATCAGAAGCTTCTGAAGCAATACCATCTTCTCTCCCTCTCTCATTAGCATCCAAAAGGTCTGACGTCTATTGCGGGGAGGGGGGCCAAGAGAGAGGGAGAGGGGAACAATTACTGTCCCTCCAGTCTTTTTTATCCTTTTCAAAGGGCAGGGTGATTAGGAGAGGAAAGTTTAGATTTCCTGAACTTGAAGTGGAAACGCAGCAGTGACAGACGCATCTCAAGACTCAATCCACATCTGGTTGAGAGCGGGGGGAGTGTGTCTGTGTGGACGGCAGTACTGTAAACCCACTCAATCTAGTGTCCCTCCACATACACATGCACCGTCCTCCACCGCTTCAGTCTGTCTTCTGTTATAAAACCACTTCAAATGCAATGACAGCTGTGCTGAAAAAACCCAAATCCACCCAGTTTCAAACTGGGTTGTGATAAACTTAAATAAACCAAAATTGCACGTATACTTATAAACTGAAATTGAATTCAAAATGGCTGACGTAATTACTGGCATATCAAGAAAACTGCTCAAGAAAAATACAAGTTTTCAAGGAAATACTGCAAAAAAAAAAATTCAGCAAATCTAACATTCAGGCTAAATTATGATTAAGTAATGATTATCAATCAACATAGTACTTAACCATAAAACATAACAGGTAATTTTGGAGCTTGACTGTCTCCACAAAACAGCAGAATATTTATGTTTGCACAGACAAAATTTATGAGTGTATTATGACACAATGGACAGCAACAACCACAACTTTTGATTAAACACCATGTTGGTGTGTATGTTTGTGTGTGTCTAGTCTTAAACAGTGAGACAAAAGAAAAAGAAATAAATATACTGTACTATGTAATGTATGTATACACTGTGTTTACTAATAGGTAATATAAAATACTACATCAAAAGTTTGAGAATTTTTTTAAAGAAATGAATACTTTTTTTCAGCAAGGACACGTTAAATTGATCAAAAGTGACATTTATAAAGTTACAAAAGATTTATATTTTAAATAAATGCTGTTCTTTTGAACTGTCTATTAATCAAAGACTCAAAAATAACATTATTTATTAACACAATAAAAAATGATTCAATTTTGGAGCTTTAGTCCCCACGAGGAAAACAGCTTATAAATCATACAGAATGATGTTTTTTAAAAATGTAAAAATGCAGAAAGTTTTCTGTGATGAGTTGGTTTAGGGGATAGAATATATACAGTATGAAAATCATTGTCTATGGAATGTCCCCATAAAACATGGAAATGTGTGTGTGTGTGTGTCTATGTGTGTGTCTTGTCTCTTTTATTTTCCAAAGACTGACTCATCCGACTCCCCCTGTTTACTGATTTAGGCCGGAGAGGAGAAGTGTGGAAAATATGCATCTTCTCTTATAACTGTCCTTTTGTGGAGCACCAGTCCTCTGTAATATTTCTCACCGAGGTGAGAGTGTCCTTGTGCCAGAGAGAAGCAGCATCTCTTAACCCCTACATTGCCGAGCAGAACCGCTCACACAAAACCTACATCAACATTAAAAAACTGTGTACTTTCATGTGATTACCTTTACAATCGGTCAGATTGGGAAGGAATATATAGCAACTACAGGTTCACTTATTATTATTATGTATTTTTATTTCTGCTAAAGGATGAAATTGTATTTTAATCTGCAATATGTTTAACAAAAGTTAGTTTTTATTTAAAAATAAGCTCATATGTAATATTTTTAGTCAGTAATTCTAGCCCAAACATAATAATCATGGTTGTTGAATATCAGAGGTTGAGTGAGCTTGTCATTTCCCAAAGTGTATCGAAGGAAACAAAGTATAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTTTTTGTGATTTATGAGAACACAAATTTGTATAATGACATGGGTATTACACTGGTATTACAACGTAAACATGAAATATTAGGACAGTCCTCATATTTAATATAGCTTTAAAAACATACTAAACAATGTTTTATTAAAAATATAAAAATGCAGAATGTTTTCTGTGATGGGTAGGTTTAGGGGTAGGGGTAGTGTAGGGGGGTAGAATGTACAGTTTGTACAGTATAAAAACCATTACGCCTATGGAATGTCCTCACTTTGATAGCAAAACAAACCTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAAAGAGAATGAAACAGAAGCTCAGGACAGCAGAGTGAGCTTGATGTGACTGATGACAGGCTGTTTGTTGCTCTGTAAATCAGCTGAATCTAAGCAGTGGAAAGGTGTGAGGGCCCTTCACATTTATGGCCCCTAAGAAGTGCGGACTACATCAACATCCTCTATCATCAACTCCAAGTGCGTCAGAAAGACACTGATTCACAGAGCTCTTTTAAACTTAAAACAGTCCACATCAGTGTTTACCATCTTAGATCATGTAAGAATAATATAATACGCTGTCAATTGTGAGACAATATAGGCTAAATTGGGGAGGCTTGATGGTGTTTAAAAAATACTTGATCACTAATTCTAAGTTATTGCCTCAGTGAATTAAAGCTGAATTACGGTTTTCATTGTTGTTGCATGTTTTTTTTTCCAAACATGAAGATATTAGGTTAAACATATATTTTAGATGCATTTTTATTGCAGTATAATGGTCCCACTGCATGACATATTAATTTTAAGACTATTACATACACTGTAAAAAATATTTTCATGATTTGTTATCATAACATTTTTTTCTTTTGTCAAATCAACTTAGATACTTAATGTAGTTCAGATAACATAATATTTTGAGTTTCTGTTGATTAAACTAATTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522093 lncRNA downstream 15301 1442144 ~ 1442443 (-) True G454733
TU522073 lncRNA downstream 15751 1434840 ~ 1441993 (-) False G454721
TU522072 lncRNA downstream 18812 1436667 ~ 1438932 (-) True G454721
TU522076 lncRNA downstream 61130 1396382 ~ 1396614 (-) True G454722
TU522049 lncRNA downstream 70543 1383176 ~ 1387201 (-) False G454707
TU522122 lncRNA upstream 60905 1522910 ~ 1523116 (-) True G454760
TU522126 lncRNA upstream 62482 1524487 ~ 1524770 (-) True G454761
TU522134 lncRNA upstream 69116 1531121 ~ 1532421 (-) True G454763
TU522151 lncRNA upstream 99657 1561662 ~ 1566311 (-) True G454780
TU522158 lncRNA upstream 106935 1568940 ~ 1570804 (-) True G454787
CI01000320_01453536_01456193.mRNA mRNA downstream 1467 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 27090 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 61645 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 110877 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 114470 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 257301 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 433819 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 451299 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 534353 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 592406 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 27091 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 27091 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 27091 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 116528 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 315864 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 2181232 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2181232 3643237 ~ 3648040 (-) True G456317

Expression Profile