G454787


Basic Information

Item Value
gene id G454787
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1568940 ~ 1570804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU522158
AAACGTTTTATGCTCTTTTTTAATTTGTTAGAATTATTTTTACATGCTTTATTTGTTCCCTTTTTTTTTTTTTTTTTTTTACATTATCAAAGCTTTTACTTAAAGACACTTTAGTGATATTTAGAAAATAAGATTTTCAAAAGCAAATGACTTTAGGGACTCTCAAAAATATATTTAGCATAAAACAGGCCAGTGAGTTGTGATGAATGTCAACAGAGTCACTAAGGCAGCCATGTTTCACAGACACCACAGTGAAAAACTCAAGTTTATGAACTTAACAGAAACCCATTGTGACGTAGCAAATGCTGTTTGTGGTGTTTTATTAACACCAGCCACAATGAGGTGAGGGAAAATCCTGTGAGAGGTAAGACAGCGTGCAGAGGGGATGTACACCCAAATTACACGCTCTATGCTATGCACGTATACTATGCACTAGGTACTCAACCGTCTAGTGTATGAATTTCATAAGGTTATTTTGTCATCCAGTATTGGAGTCTGAAAGCCCCTCCACCTCTGCTATGCAAAGAAAAGCTGCGACAGTTGAGTGCATGTCCAATGTTTCACACTTCGTTTTTCGGTTAAATGAGTGCATCATCCAGCTATTTCAATTGCACTTGTTCTTTTTGTCATTTTCAGTGTGTACACTATTCACACTATTTACTAAAAAAATGGCACAGAATAGTGCACAAGTTTGCAAATTGGGACGCACCTACAGACTTAGTCTGACCCTTGCTGGCTCTGGATGCTGATCCACTCCCTCTTCTTTTCCTGTTCACTCACACACACACACACACACACACACACACTCGCCCATTCATCTGTTGCCAAAACGGTAGAATGAGGAAAGGCAGAGAGGGAGGGAGGAGACGGGGACAGAGAGGGAAAAAAAAAAAAAAAAAAAGCACACACGCAGCTGCATCTGTGAGGTTGCCATAGCAACTGTCTCCACGTGCTTGACACATTAGTGCAAAGTGGAGCCCCCCCTCCCCCTCCGCTCCCATTTTCTGCCGCTGAGGTCACAGTGCAGTCACACACACAGGCCTTCACCGTTCACTTGCTGTCAACTAACACTACACAGCATCACCGTATCTGGATGAGCAACACATCTTGCAGACGTCAAGTTAAAAGCAAACCCAAACACACCAGGCCAGACGTGCATGCATACACATACGCACGTACAGCTGATTGTAAGATTATTCACAAATTTTTGCTCCTCACACCAAATCAGAACAGGATTTGGGGTATAAACTTCTCTTCCCTAGTGAAGGAGAACCCGAGTATTGCGTGCTGTGTCTGTACAGATGTCAGCCATGAGGGGGCGCTACCAGCCCACTGACTGTGAGAGTGATGGGGGAGAGAGAGGGCCCTGCCTCCACCAGCAGCCATTACTGCTTCACTCTCAGCACATACACAGATACTCTTCTTGCACAGGCAAGCATCACTGCTACTATTGCTCATATTAGGGTTAGGGATGTGCATAAAGGATGTGATCAGGCTTTAGATATGGCTTGAGAAGTTCAATGAATAGCCAGAGACGAGAATACCATACAGATTTATTGGTGAGCTCTTGACTTGTCAGTAAGCAAGAACCGAAAAACTACCCAGAACAGCCTAGCAACCATCCACACCACACTAGCAACCATCTAGCAATGCGCTGGCAACCATTATGCCTGTGACGTCTGCATGAGCAAGCACCACTGACCAGAGCTGCGCAATTTGGCGAAATTTGCTATTTAAAAATGTGATACTAAAAGACGCTTCCAGATTTGCTGTGCTTTTTTTGCAGGGCAGCGCAATTTTTCCTTTGTGATTACTATATATATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU522158 True 1825 lncRNA 0.43 3 1568940 1570804

Neighbor

gene id symbol gene type direction distance location
CI01000320_01453536_01456193 ME-T, NTL, TA coding downstream 112663 1453156 ~ 1456277 (-)
CI01000320_01426753_01430603 NA coding downstream 138286 1426176 ~ 1430654 (-)
CI01000320_01394827_01394991 NA coding downstream 172841 1394798 ~ 1396099 (-)
CI01000320_01345762_01346867 NA coding downstream 222073 1345662 ~ 1346867 (-)
CI01000320_01338270_01341123 SH3BGRL3 coding downstream 225666 1336279 ~ 1343274 (-)
CI01000320_01719471_01731780 NA coding upstream 148502 1719306 ~ 1731876 (-)
CI01000320_01896359_01898516 NA coding upstream 325020 1895824 ~ 1898516 (-)
CI01000320_01914015_01916289 NA coding upstream 342500 1913304 ~ 1916289 (-)
CI01000320_01996579_02046284 NA coding upstream 425554 1996358 ~ 2046284 (-)
CI01000320_02054421_02068560 PHACTR4A coding upstream 483607 2054411 ~ 2068560 (-)
G454780 NA non-coding downstream 2629 1561662 ~ 1566311 (-)
G454763 NA non-coding downstream 36519 1531121 ~ 1532421 (-)
G454761 NA non-coding downstream 44170 1524487 ~ 1524770 (-)
G454760 NA non-coding downstream 45824 1522910 ~ 1523116 (-)
G454738 NA non-coding downstream 106935 1457744 ~ 1462005 (-)
G454758 NA non-coding upstream 15019 1585823 ~ 1586895 (-)
G454753 NA non-coding upstream 26021 1596825 ~ 1599621 (-)
G454817 NA non-coding upstream 58434 1629238 ~ 1634639 (-)
G454823 NA non-coding upstream 85143 1655947 ~ 1656149 (-)
G454824 NA non-coding upstream 92735 1663539 ~ 1663785 (-)
G454686 NA other downstream 427060 1141242 ~ 1141880 (-)
G454663 NA other downstream 513045 1051468 ~ 1055895 (-)
G454495 NA other downstream 1040388 527059 ~ 528552 (-)
G456317 NA other upstream 2072433 3643237 ~ 3648040 (-)

Expression


Co-expression Network