RNA id: CI01000320_01996579_02046284.mRNA


Basic Information

Item Value
RNA id CI01000320_01996579_02046284.mRNA
length 3656
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000320_01996579_02046284
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1996358 ~ 2046284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAAAGTTTCAGCCCCCGGACAGTTTTGACTTTGGTCACCCCGAACGTTGGCCTGAATGGCGCCAGAGATTGCGCCGTTACAGGATAGCCACCAAACTGGACAAAGAAGAGGCTGAAGTTCAGGTCTGTACGCTGCTTTATTCGATGGGAAAAGAAGCTGAACATGTGTATCAGACATTTACGTTCGGGAAGGAAGAAAGAGAGGACTATGATACTGTAATCAGGAAGCCCGATGACTACTTTGTACCGAAAGTTAACGTTATTCACGAGCGTGCACGATTCCACATGAGGGCTCAAAAGCCAGGTGAAATGGCCGAGGAATATATCCGTAGCCTCCACGAGTTAGCGAACACATGTGACTTCGGTGCTGCCAAAGACGAAAATATTCGCGACAGACTCGTGATTGGGATTCTGGACAGAAAACCGTCACAAAAGCTTCAGTTAATGCCCGACTTGACTCTCAGAAACGCCGTAGAGCTCGTGAGGCAGTCGGAACAAGTCCGTGGACACGTTAATGAACAGGCTGCCAGCATTAGTGCTCAAATCAGCGAGCCCAGGGGTACATTGCACTGCAGAGGACAGTTCAGAGCTATGACTACCTTTAAAGATAAGCAGTATAGTTTTGAAGCGTTCGTGGTGACTGGTCCCCATGTAAACAATCTCCTTGGTCGAGATACAGCAAGTGCAATGGGTTTAGTTAAGATGCTGGAAGAGCTTCAACCTATTTCCTTTTCGGAACTGGGACTAGTAAAGACAAAACCCATTAAAATCTGCCTGAAAGAGGATGCTGTACCATACAGTGTGCACACTGCAAGACGGGTGTCCGTGCCCTTGCTTTCAAAGGTCAAGGCGGAGCTAGAGAGAATGGTACAATGCGGTGTCATTAAGGAGAGAACTGAGCGTACTGAGTGGTGCGCCCCTATGGTGGCCGTTCCAAAGAAAACAGGGCAAATCAGAATTTGTGTTGATCTAAAACAACTAAATAAAGCTGTAAAAAGAGAGAAATTTGTGCTGCCAACGGTTGACGACATCCTTCCTAGACTAGCACATGCCCAAGTTTTTTCACTTCTGGATGCAGCTAGTGGCTTCTGGCAGCTGCGACTGGATATGGACTGTGCTAAACTAACAATGTTTATTACTCCTTTTGGAAGATATTTTTTCCGCAGGCTACCGTTCGGGATCACCAGCGCACACAAAATCTTCCAACGGGAAATGTCAAAGATCCTCAAAGACCTGGAAGGAGTTGCAGTTTTCATGGACGATATCTTAGTATTTAGCAACACTCCAGAGGAACATGAGCAGCGACTGCAGAGGGCTCTGGAATCCATTGACCGGGCTGGTCTAAAGCTGAACAAGGAAAAGTGCCTGTTACGGCAGAGTCAGCTCAGGTACCTGGGACATGTCATAGACAAGGAGGGCATACACCCAGACACAGCCAAAATCGAAGCTATCACGCATCTTGAAAAGCCGAAGAACATCTCAGACCTAAGGAGAATGCTAGGAATGATTCATTACCTGGGCAGAGATGCAGTATGGTACTGGGGATCTGTGCAAGAGGAGGCCTTTGAAAATGTAAAGTGTCTAATTACAGAAGCTCCCGTACTAGCATTCTATGATGTCACAAAGCCCACAGTCGTCAGCGCAGATGCAAGCAGCTATGGTCCGGGGGGCGTTTTGCTGCAGGACCATGACGGACAGCTGAAACCAGTGGCCTACTGTTCCAGGGTGTTGACCGATGCTGAAAAAAGATATGCCCAGATCGAAAAGGAGTGCCTGGCGGCTGTGTGGTCCTGTGAAAAATTCTCAAGGTTCCTGTATGGATTGGAAAGTTTCATCCTGCAAACCGACCATAAACCACTGATTCCATTGATCAATGCCAAGGATCTTGATTCAGTTCCCTTGAGATGTCAAAGGCTGTTACTGCGGATGATGCGTTATAATCCTGTTGCACAATATGTACCCGGCAAACAACTGGTGGTCGCTGATACGCTTTCACGACACCCTCAGTCAACCATCTCTTCAGTGGTCTCAGAATTAGTGCAAGAAGTGGAAGCTTATGAGAATGCAGTGAGTGGTGCATGGCCAATCTCTCCCACAAAGCTGGAATCTGTGAAAAGAGAGACAGAGATGGATTTCAAGCTACAAATGGTCAGGCAGTACGTGACCGATGGCTGGCCCAGGTATGCTGCTAATGTCCCACAAGCCATAAAATCATACTACAGTGCACGCCATCACATGTCAATTTTCCAGGACCTTGTGCTTTATGATGACAGAATCATAATTCCCCGAAATATGAGGTCCGAAATACTACAAAGACTGCACAGTGGTATACCAAGATGCACTGGCCCACCCATGGCCCAAAGTGCTGCTGTATGCTTTTCCTCCCCTATGCCTGATAATTCCCACACTAGCCAGGGTGGGACCTGGTCTGAGTTCTCTGTGCTAAAAGACAAGAGGCTTGGGGCTTTTGCAGCAACAGTGGGTAGCACAGATGCAAAGGAATCTCGTGTTTTGTTCCCTGTTGCGGATAACCTGTGGGCATGGGTGCTCCCTGTGGGGTCTCCGAATGCACCGGCACACCTTTCGGGTCCACACCTGCATTGTCCTATTGAAGGAATGGACATAATCATCGTTGCATCTGAGAAGCTTGAGTTTGGGGCCTGCTCGGATGCGTCACTGAAGAGCAGGGATGAAGAGAGGTCCCCTTTCTCAGAATTGGCGGGCACAGATGCATCACTGAAGACCAGGGATGTGGGGCATGAAGTTTCTTGTGCCTCCACTAAATCCCCCCACTGGCCAGAGATGTGGCCCCCATACTCGGGCTCCTCAGATATAGGGGATGAAACTTCCACCATTGCCCACCACTTCCCCGCAGCAAGGGCCGTGAAAGTGAAACATTTTACATTAAATGGCTGGCCAAAACATGTCACTGAGGATGAACTAAAGCCATATTTTTTTAAAAACACAGAGCTAACTGTGGAATCTGAGTGTGTTCTATGGGGTTTTCGTGTGGTCGTGCCAGAAGTGTTAAGATCAAAAATGCTGACAGAGCTACATCACAATCATCAAGGCATGGTGAAAATGAAGGCCCTAGCTCGAAGCCATTTTTGGTGGCCTAACCTGGATGCTGACATAGAAGTACTAGTGAGCACCTGTCAGACATGCCAGGCAGATAGGAATCAGCCTGCTACAGCTCCTGTGCATAATTGGAGTTGGTCTAATAGGGCCTGGCAAAGAATACACGTGGACTTTGCTCAAAAAGGAAAATATAACTTTCTAGTAGTAACAGATAGCTTCTCACGCTGGCCAGAAATTGCACTAATGTCTAGTACCACCGCAGGAAAGACCACTGAGGTATTACGGGGATACTTTGCCAGTTGGGGCCTTCCTGATGAATTGGTATCTGATAATGGTCCGCAGTTTGTCATGTGAATTTCAAACATTTTTGAGAAACAATGGTGTAAAACACATCCTGCATACCATCCAGCTTCTAATGGAGCTGCAGAACGGTTGGTGCAAAATTTTAAAAGGGTTTTGGAAAAGGGAAAGAATGAAAATGTGTCTTTACAGCATTGTATCCACAATTTCCTTTTTTGTTATCGAAGCACCCCTCAATCTACCACATGAAAAACGCCTGCAGAGTTATTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523137 lncRNA downstream 15302 1980746 ~ 1981056 (-) True G455676
TU523123 lncRNA downstream 45064 1949857 ~ 1951294 (-) True G455663
TU523119 lncRNA downstream 49998 1946132 ~ 1946360 (-) True G455661
TU523113 lncRNA downstream 62116 1933949 ~ 1934242 (-) True G455656
TU523099 lncRNA downstream 75761 1920380 ~ 1920597 (-) True G455642
TU523148 lncRNA upstream 4204 2050488 ~ 2122675 (-) True G455681
TU523182 lncRNA upstream 84130 2130414 ~ 2130646 (-) True G455714
TU523188 lncRNA upstream 159502 2205786 ~ 2262847 (-) True G455720
TU523233 lncRNA upstream 275234 2321518 ~ 2321728 (-) True G455765
TU523241 lncRNA upstream 282411 2328695 ~ 2329027 (-) True G455773
CI01000320_01914015_01916289.mRNA mRNA downstream 80069 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01896359_01898516.mRNA mRNA downstream 97842 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01719471_01731780.mRNA mRNA downstream 264482 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01453536_01456193.mRNA mRNA downstream 540081 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 565704 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_02054421_02068560.mRNA mRNA upstream 8127 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
CI01000320_02151521_02154094.mRNA mRNA upstream 104958 2151242 ~ 2154201 (-) True CI01000320_02151521_02154094
CI01000320_02165761_02186455.mRNA mRNA upstream 119477 2165761 ~ 2186455 (-) True CI01000320_02165761_02186455
CI01000320_02201385_02204409.mRNA mRNA upstream 154840 2201124 ~ 2205644 (-) True CI01000320_02201385_02204409
CI01000320_02224076_02235673.mRNA mRNA upstream 177185 2223469 ~ 2235673 (-) True CI01000320_02224076_02235673
TU522089 other downstream 565705 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 565705 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 565705 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 655142 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 854478 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1596953 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1596953 3643237 ~ 3648040 (-) True G456317

Expression Profile