RNA id: TU523113


Basic Information

Item Value
RNA id TU523113
length 294
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G455656
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1933949 ~ 1934242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAATTTGAACACAGTAGGTAGGCTACTTTGGACACGTTAACCCTCTATGGTATGCAATATGATATCAATGAGAAAAAAAAAAAAAAAAAAAAAAAGTGTTGTTTTTTCCTGCTTAAAATTGGACACTTTAACAATATCAATAAACATTTTCATAAATTTTTAATTTATTTATTTTTTATAAGTTTGTTGCCTCGAGGCAACATTGTACCACAATGGAAAAATTTAAACATTTGGCATTTTCATGTAGAAAAAAGAAATATATTGAAAACATCAATTTCTTCAACTTGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU523099 lncRNA downstream 13352 1920380 ~ 1920597 (-) True G455642
TU523092 lncRNA downstream 20228 1913426 ~ 1913721 (-) True CI01000320_01914015_01916289
TU523085 lncRNA downstream 25671 1907962 ~ 1908278 (-) True G455628
TU523081 lncRNA downstream 31057 1902673 ~ 1902892 (-) True G455624
TU523080 lncRNA downstream 31568 1899602 ~ 1902381 (-) True G455623
TU523119 lncRNA upstream 11890 1946132 ~ 1946360 (-) True G455661
TU523123 lncRNA upstream 15615 1949857 ~ 1951294 (-) True G455663
TU523137 lncRNA upstream 46504 1980746 ~ 1981056 (-) True G455676
TU523148 lncRNA upstream 116246 2050488 ~ 2122675 (-) True G455681
TU523182 lncRNA upstream 196172 2130414 ~ 2130646 (-) True G455714
CI01000320_01914015_01916289.mRNA mRNA downstream 17660 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01896359_01898516.mRNA mRNA downstream 35433 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01719471_01731780.mRNA mRNA downstream 202073 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01453536_01456193.mRNA mRNA downstream 477672 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 503295 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01996579_02046284.mRNA mRNA upstream 62116 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 120169 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
CI01000320_02151521_02154094.mRNA mRNA upstream 217000 2151242 ~ 2154201 (-) True CI01000320_02151521_02154094
CI01000320_02165761_02186455.mRNA mRNA upstream 231519 2165761 ~ 2186455 (-) True CI01000320_02165761_02186455
CI01000320_02201385_02204409.mRNA mRNA upstream 266882 2201124 ~ 2205644 (-) True CI01000320_02201385_02204409
TU522089 other downstream 503296 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 503296 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 503296 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 592733 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 792069 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1708995 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1708995 3643237 ~ 3648040 (-) True G456317

Expression Profile