RNA id: TU522151


Basic Information

Item Value
RNA id TU522151
length 1574
lncRNA type intronic
GC content 0.36
exon number 2
gene id G454780
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1561662 ~ 1566311 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAAATCCATCTTTTACTTTATGTATCTTATTATTCAAAATATTACACTTCAAAACTAATTAATTGTCAATAATTTTCATTATTGATGATTATCGATTTTCGTTTTGTTGTTGCAGCCTTGTTACAGCCCTAATTGAAAGTTAAGAACCTCAATTTACTTCATAAGGGAATAAACTACCCGTCCCATGAAACAATGCAGTTGATTAACAATTTAATCCAAGAGGACAAAGTACTGAAATATTCAAAATTAAAAGTTTAAGTTTACTGCAATATTTTTAAAAATATACCAATATTGTTACACAATGTACACGTTTACACCATTAGTTTTCAATGTTTCATAGGATTGCTACTTTTGGTGCAGTGTTTCCATGGTAACAGTGACTTCTCTGATTGGTGGATCTCTCTTGAATATTATGGGTAATGGAGTTCTACACTGAAAATACTGCAATTAAGCAGTTAAAAAAAAAAAAATATATATATATATATATATCAGCAAGTTGTAATCACACTGACTATAGGCTTTTACGGAAACATACATCATCACTTAACCTCAGAGCTCCTGGCGTGTCTTTAAACCTCTTACACATTAATCACTACAACTCAATTTATCCATGGGGAAAATGAATGGGATTTTTCCGGAACCTGACTGTTGCGCTATATGCCATGGTCACTCTCTCTAAGAGTGATTGAATGTCTGTGATTGGATTTACCAGTAAACCAATCAAAGCTGGAGCCACCGAGTCAAGGGCTGCATCCGAAAACTTAGGCAGCTGACTTGTTGCCTCGCTGCCCTATCAGGGATTGACTTTGCAGGCAGCATTTGAGCATGAAGGTATCTTACGAAACTGATTTGGACCGACTTCTGAGACAGTGTAACATTTTAATGATCTATAGCAAAACAGAGACAGTTTTGGTGATAACTAAGCAAATATTTAATTAGTACAACCATAATTTCTCACTAGAATGACATCAAAAGTGGAAAATGTTGGTCAAAAATGTACATTTACACAAACTGACCACCAACCGCAACTTTCAGATGCCATCTTTGTTTTTCAGCTCAACTTTTACAGAATGTAACACAGGATTGTGGGATATCATAGACAGCAAAGGATACATCTATACTGCCTTCAAAAATCGATCAGATGAAGGTATCTCAGGGGACAGCAAGTGAAGCTAACGTTGGATTCAGACGTGACTTGATGCCTTCCTACCTTCCTCCGAAGGCAACATTTTTAAGCTCTCGGACACAGCCAAAGTCAGATAAATACTCTCAATGTCTTTTGGTATTTCTCATAAATTTTGGTTAATAACTACACCAGATAAAATATGTTCAAAACACTATAACAACTAAGGGTTTCCATGAGTAAAAATATCCTTCAGTGACGCACTGAATAATTTTGTAAGCCAAATGTTATCACATCATATGGGCACCATCGTCAGAGCTGCAAATAAAAATATCTATTCACAGGCATCTGGACTGATCCATCGTCTCTCTCTCTCTCTCTCTCTCTTTCAAAATGAGCAAATGGCTTCTAGCTTCAAAATGACATTGCATCTGCACTATAAGCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522134 lncRNA downstream 29241 1531121 ~ 1532421 (-) True G454763
TU522126 lncRNA downstream 36892 1524487 ~ 1524770 (-) True G454761
TU522122 lncRNA downstream 38546 1522910 ~ 1523116 (-) True G454760
TU522098 lncRNA downstream 99657 1457744 ~ 1462005 (-) True G454738
TU522093 lncRNA downstream 119219 1442144 ~ 1442443 (-) True G454733
TU522158 lncRNA upstream 2629 1568940 ~ 1570804 (-) True G454787
TU522120 lncRNA upstream 19512 1585823 ~ 1586895 (-) True G454758
TU522115 lncRNA upstream 30514 1596825 ~ 1599621 (-) True G454753
TU522195 lncRNA upstream 62927 1629238 ~ 1634639 (-) True G454817
TU522214 lncRNA upstream 89636 1655947 ~ 1656149 (-) True G454823
CI01000320_01453536_01456193.mRNA mRNA downstream 105385 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 131008 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 165563 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 214795 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 218388 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 152995 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 329513 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 346993 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 430047 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 488100 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 131009 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 131009 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 131009 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 220446 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 419782 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 2076926 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2076926 3643237 ~ 3648040 (-) True G456317

Expression Profile