RNA id: TU522120


Basic Information

Item Value
RNA id TU522120
length 482
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G454758
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1585823 ~ 1586895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATGGGGGCTGGACCTTGGCCTGGTTCTTTTTAGGGTCACTGTTGAAGAAGTCGGGTGGAGGGTCTTCCCCTCGTTCAATCTTGCACTCAAAGGCATAGAGACACTGGATGTACTGTTTCTTCAGAGAGCTGGCCGCACTACTGGATGTGCCCACATTCAGGTTAGTGGCTAATTCCCTCCACTTTTTATTCTTGTTAACCTGAGTGAGGCCGCCAATCTCTTTGACGGACACGTAGAGGCGGAAGAGGTCAAGGGGCTTGCGGCCCACAGCAGGGAGATTGCTCATGCCCATGGCTTTCTCCTCAGCAAATGCAAGGTAACGATCCACCCACATTTTCCGCTCTGGTTCTGGACCCAGCTCATACAGACGGGTTATCTTCTCATTAGTGGTGGTAGAGGAACTTGACTTTTTTTGATTCAGTCTTAGGAGTCCCATCCACTTTGTTATTCAACTTCTGAGATTGGTTGAGTTTGTCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522158 lncRNA downstream 15019 1568940 ~ 1570804 (-) True G454787
TU522151 lncRNA downstream 19512 1561662 ~ 1566311 (-) True G454780
TU522134 lncRNA downstream 53402 1531121 ~ 1532421 (-) True G454763
TU522126 lncRNA downstream 61053 1524487 ~ 1524770 (-) True G454761
TU522122 lncRNA downstream 62707 1522910 ~ 1523116 (-) True G454760
TU522115 lncRNA upstream 9930 1596825 ~ 1599621 (-) True G454753
TU522195 lncRNA upstream 42343 1629238 ~ 1634639 (-) True G454817
TU522214 lncRNA upstream 69052 1655947 ~ 1656149 (-) True G454823
TU522215 lncRNA upstream 76644 1663539 ~ 1663785 (-) True G454824
TU522216 lncRNA upstream 77469 1664364 ~ 1664563 (-) True G454825
CI01000320_01453536_01456193.mRNA mRNA downstream 129546 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 155169 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 189724 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 238956 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 242549 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 132411 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 308929 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 326409 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 409463 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 467516 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 155170 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 155170 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 155170 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 244607 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 443943 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 2056342 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 2056342 3643237 ~ 3648040 (-) True G456317

Expression Profile