RNA id: TU522215


Basic Information

Item Value
RNA id TU522215
length 247
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G454824
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1663539 ~ 1663785 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACCCTGGTGTGCTAAAAAATGTAAATATGAATGGGAATATATTTCAGAGATATTTTACTCATAAGAATTTCTAGGGGTGCCAATAATTGTGGCCAACATGTATTGGAGAAAAACATTTATTTCATAATGTGAGTTTCCCCCCACTTTCAATTGTTTTACTTCAATGAAAGGTTAGAATTTTGTGAATTTTTTGAATGAAAGATCAAAAGGATAAACAATGCAAATTTATTTTCACAGCCGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522214 lncRNA downstream 7390 1655947 ~ 1656149 (-) True G454823
TU522195 lncRNA downstream 28900 1629238 ~ 1634639 (-) True G454817
TU522115 lncRNA downstream 63918 1596825 ~ 1599621 (-) True G454753
TU522120 lncRNA downstream 76644 1585823 ~ 1586895 (-) True G454758
TU522158 lncRNA downstream 92735 1568940 ~ 1570804 (-) True G454787
TU522216 lncRNA upstream 579 1664364 ~ 1664563 (-) True G454825
TU522218 lncRNA upstream 4129 1667914 ~ 1668228 (-) False G454826
TU522219 lncRNA upstream 4129 1667914 ~ 1668228 (-) True G454826
TU522225 lncRNA upstream 12514 1676299 ~ 1689008 (-) True G454830
TU522232 lncRNA upstream 27682 1691467 ~ 1691741 (-) True G454837
CI01000320_01453536_01456193.mRNA mRNA downstream 207262 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 232885 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 267440 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 316672 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01338270_01341123.mRNA mRNA downstream 320265 1337537 ~ 1343274 (-) False CI01000320_01338270_01341123
CI01000320_01719471_01731780.mRNA mRNA upstream 55521 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01896359_01898516.mRNA mRNA upstream 232039 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 249519 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 332573 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 390626 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
TU522089 other downstream 232886 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 232886 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 232886 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 322323 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 521659 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1979452 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1979452 3643237 ~ 3648040 (-) True G456317

Expression Profile