Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU522246 |
| length | 738 |
| lncRNA type | intronic |
| GC content | 0.46 |
| exon number | 1 |
| gene id | G454851 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000320 |
| NCBI id | null |
| chromosome length | 3894707 |
| location | 1722972 ~ 1723709 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU522235 | lncRNA | downstream | 20601 | 1702140 ~ 1702371 (-) | True | G454840 |
| TU522232 | lncRNA | downstream | 31231 | 1691467 ~ 1691741 (-) | True | G454837 |
| TU522225 | lncRNA | downstream | 33964 | 1676299 ~ 1689008 (-) | True | G454830 |
| TU522218 | lncRNA | downstream | 54744 | 1667914 ~ 1668228 (-) | False | G454826 |
| TU522219 | lncRNA | downstream | 54744 | 1667914 ~ 1668228 (-) | True | G454826 |
| TU522344 | lncRNA | upstream | 145280 | 1868989 ~ 1869218 (-) | True | G454942 |
| TU522359 | lncRNA | upstream | 159579 | 1883288 ~ 1883602 (-) | True | G454957 |
| TU522362 | lncRNA | upstream | 160840 | 1884549 ~ 1884893 (-) | True | G454960 |
| TU522369 | lncRNA | upstream | 165705 | 1889414 ~ 1889931 (-) | True | G454967 |
| TU522370 | lncRNA | upstream | 166448 | 1890157 ~ 1890384 (-) | True | G454968 |
| CI01000320_01453536_01456193.mRNA | mRNA | downstream | 266695 | 1453156 ~ 1456277 (-) | True | CI01000320_01453536_01456193 |
| CI01000320_01426753_01430603.mRNA | mRNA | downstream | 292318 | 1426176 ~ 1430654 (-) | False | CI01000320_01426753_01430603 |
| CI01000320_01394827_01394991.mRNA | mRNA | downstream | 326873 | 1394798 ~ 1396099 (-) | True | CI01000320_01394827_01394991 |
| CI01000320_01345762_01346867.mRNA | mRNA | downstream | 376105 | 1345662 ~ 1346867 (-) | True | CI01000320_01345762_01346867 |
| CI01000320_01338270_01341123.mRNA | mRNA | downstream | 379698 | 1337537 ~ 1343274 (-) | False | CI01000320_01338270_01341123 |
| CI01000320_01896359_01898516.mRNA | mRNA | upstream | 172115 | 1895824 ~ 1898516 (-) | True | CI01000320_01896359_01898516 |
| CI01000320_01914015_01916289.mRNA | mRNA | upstream | 189595 | 1913304 ~ 1916289 (-) | False | CI01000320_01914015_01916289 |
| CI01000320_01996579_02046284.mRNA | mRNA | upstream | 272649 | 1996358 ~ 2046284 (-) | True | CI01000320_01996579_02046284 |
| CI01000320_02054421_02068560.mRNA | mRNA | upstream | 330702 | 2054411 ~ 2068560 (-) | True | CI01000320_02054421_02068560 |
| CI01000320_02151521_02154094.mRNA | mRNA | upstream | 427533 | 2151242 ~ 2154201 (-) | True | CI01000320_02151521_02154094 |
| TU522089 | other | downstream | 292319 | 1426783 ~ 1430653 (-) | False | CI01000320_01426753_01430603 |
| TU522090 | other | downstream | 292319 | 1426783 ~ 1430653 (-) | False | CI01000320_01426753_01430603 |
| TU522091 | other | downstream | 292319 | 1426783 ~ 1430653 (-) | True | CI01000320_01426753_01430603 |
| TU521994 | other | downstream | 381756 | 1336279 ~ 1341216 (-) | True | CI01000320_01338270_01341123 |
| TU522025 | other | downstream | 581092 | 1141242 ~ 1141880 (-) | True | G454686 |
| TU523828 | other | upstream | 1919528 | 3643237 ~ 3648040 (-) | False | G456317 |
| TU523830 | other | upstream | 1919528 | 3643237 ~ 3648040 (-) | True | G456317 |
