RNA id: TU522369


Basic Information

Item Value
RNA id TU522369
length 454
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G454967
representative True

Chromosome Information

Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 1889414 ~ 1889931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTTTTCATGTCTTTTACTTTGTAGTTTTATTCTTGTTGCTTGTTTGTGCCATGCTTCCCTTGCTCCTCATGTTCTCCCTTAGTCTATGTGTCATGTTCTCATTGGTTGTTTATGGTCATGTGTTTCTGAGTTCTGTTCTGTCATTGGTTCCCTTGTTCCTTGTGTCACTTCCCCATTGGTTGTCTTAGTCATGTGTTCTCTAAATTCTTGTATTTAAAGTCATTGTCTTCCCCATGTTACTTTGTCGTGTATTGTTAATGTAACCCTGCTGTCAGTGAGTGGTCAAGTCTGCTCATGGTCAAGTCTGCTCATGGTCAAGTCTGCTCATGGTCAAGTCAAGTGGTTACTTTGTTTGTTTGCTCACTTTACTTCAATAAACTTCACTTGTGTTCATCATCTTGCCTTCAGTCTGGACTAATCATTACAATATTGTACCCATATCTCAAGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU522362 lncRNA downstream 4521 1884549 ~ 1884893 (-) True G454960
TU522359 lncRNA downstream 5812 1883288 ~ 1883602 (-) True G454957
TU522344 lncRNA downstream 20196 1868989 ~ 1869218 (-) True G454942
TU522246 lncRNA downstream 165705 1722972 ~ 1723709 (-) True G454851
TU522235 lncRNA downstream 187043 1702140 ~ 1702371 (-) True G454840
TU522370 lncRNA upstream 226 1890157 ~ 1890384 (-) True G454968
TU523080 lncRNA upstream 9671 1899602 ~ 1902381 (-) True G455623
TU523081 lncRNA upstream 12742 1902673 ~ 1902892 (-) True G455624
TU523085 lncRNA upstream 18031 1907962 ~ 1908278 (-) True G455628
TU523092 lncRNA upstream 23495 1913426 ~ 1913721 (-) True CI01000320_01914015_01916289
CI01000320_01719471_01731780.mRNA mRNA downstream 157538 1719306 ~ 1731876 (-) True CI01000320_01719471_01731780
CI01000320_01453536_01456193.mRNA mRNA downstream 433137 1453156 ~ 1456277 (-) True CI01000320_01453536_01456193
CI01000320_01426753_01430603.mRNA mRNA downstream 458760 1426176 ~ 1430654 (-) False CI01000320_01426753_01430603
CI01000320_01394827_01394991.mRNA mRNA downstream 493315 1394798 ~ 1396099 (-) True CI01000320_01394827_01394991
CI01000320_01345762_01346867.mRNA mRNA downstream 542547 1345662 ~ 1346867 (-) True CI01000320_01345762_01346867
CI01000320_01896359_01898516.mRNA mRNA upstream 5893 1895824 ~ 1898516 (-) True CI01000320_01896359_01898516
CI01000320_01914015_01916289.mRNA mRNA upstream 23373 1913304 ~ 1916289 (-) False CI01000320_01914015_01916289
CI01000320_01996579_02046284.mRNA mRNA upstream 106427 1996358 ~ 2046284 (-) True CI01000320_01996579_02046284
CI01000320_02054421_02068560.mRNA mRNA upstream 164480 2054411 ~ 2068560 (-) True CI01000320_02054421_02068560
CI01000320_02151521_02154094.mRNA mRNA upstream 261311 2151242 ~ 2154201 (-) True CI01000320_02151521_02154094
TU522089 other downstream 458761 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 458761 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 458761 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 548198 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 747534 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 1753306 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 1753306 3643237 ~ 3648040 (-) True G456317

Expression Profile