RNA id: TU216464


Basic Information

Item Value
RNA id TU216464
length 2984
RNA type TUCP
GC content 0.47
exon number 7
gene id G146556
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14259685 ~ 14263667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACAATCTCACAGAGAGAAAGCAAAGGGTGGTATGTGCTCGGGGCCAATTTCGGTGCATCACTTACACCCACCGACCACAAGTTGGAGCTCCATCCTCGTTCCTACGAGACGCCTGTGCGTGTCGGTGAGGGAGACCAGGACAGGCAGGAGAAAGAGATGAGACGAAGAAGAGGTTTCGGAGGTTTTCCTCTTTCTTCTGTTGTGTGTCTCGTCCTAAATCCACCAGAGCTCAGGTGGAGCAAAGTGAGGTGGACCAGGACACAGGCTCATCCAGGAAGGGTACCGATGATCAGACTTCTCAAAAGGACGTCACCTGTTCTGTAGAGAACAATGATCATCAGAAGCCTCCTTCCAGTGTCCGTCGTCAGATGAGAGGGCACCACATCTGCTGGAACAGCTGGACTGTGATGAGATTGCGAGGGTTTAGGAAATACACTATCGGCAAGAAGATGGGGGAAGGAACATACGGCTCTGTGTATGAAGGGACCCGCTGTGAGAATGGCCTTCAGGTGGCTGTGAAATTCACAGCAAAGACTGGAAACTATCCGTACATCAGACTTCCTGACCATCTCAGACGAATTCCTTTAGAGGTGGCCTTGGCAGTATTGGCCAATCAAGGCCCAGGTTACAGAGTTACTGGACTGGCAGGACCAACTCGATCAGTACATCATGGTCCTAGAGCAGCCCTCACCCTGCATGGACATGTACGATTTTTGGCTGCATTATGACGGCCTCTTCAGTGAGGGAATGGTCCGTCATTTAATGCATCAGGTTATCAACGCTGCTGCTGTCTGCTGTTCCCGGGGGGGTCCTCCATCGAGACATCAAGATGCTGGTCTACATAGAGACTCTGGAGGTGAAGCTGATTGATTTCGGCTGTGGGGACCTCCTACAAAGCACACTGTACAAAACCTACAGTGGGACAGCGAGGTACTGCCCTCCTGAATATTTTGAGAGGGGTGAGTACCATGGGAAACAGGCAACAGTGTGGTCATTGGGAGTGCTACTGTTCCGCATGATCACCAGCCTTTTCCCCGAGAGCAACGATATCAGTCTGATGGACACTGATATCTGGTACCAGCCAGACTTCTCCGATGTTCAGAAAGTGTGAAGTTAAAGGTGACCGTAAGTGCACAGAATGCTGCCGATTTATCCGAGGATGTCTGAAGACTAACCTAGAGAAGAGGCTTCATTTGGAGGAGATGCTCTTCCATGACTGGTTTAAGGGCCTTCTGTAAGTCATGGAGAACAGGATCAGCCTTGCGTCTGGCGGGCTGACATGGGTGACCCCTCCATCCCTCCAGTCTTAGCGTCTTGCGGGGCTGGCAGGACTTGGTAGCGTTTGGAGCCTTAGTTAAGTACAGCACAATCCaatcatatttcaaaaatgGAGTCACCTAGACCTTTTCAGAGCTCCTTGTCAGGCCTGTTCCACAAGTTCCTGGCACTGCCGCCATAGAGCTTCCTGCCACTCATATGGAGACAAGAGTTTTTTCAGCCAACTTGGACCCAAAGGTCCTGTCAGGGCCACTGCAGAAATCCTTGTGAAGGCCACTTTCACTGCCTTTCCAGAACCTGCTGAGGTCAGAGAGAACCGAATCAAGAGCGCCACAGAACTTACTCGACATGGTATACTTTCAGAGCTGCTTGTCCAGGCCTGAAGGTTTCTGCTGCTGCAACCCCAGAACCCGCAATGGTTTCAGAGATCGGTCTCATAGCAGCTGAAGTTGGAAAGCTTCGCATCATGTATGCCATGAAGATTCCTCCCATGATGGTGTTGAGATTCATGCCACGGTTGCCAAAAAACCTCCAGCCAAACAACCTCAACCTTCTTGTCAGAGCCTCAGCCAGAGCTAAAGCTGCTCCAGTCCCAGAGCTCCTGTCTCAACCTCCCTGGTCCCAAAGGTTCCTGCTAAAGCTGCTCTGGCCCGAGAAGTTTTTGTCTCGACGGCATCAGAGGATTCTTTTACAGACCCAGTGTTTCCTGTCACTGGTGTGATTCCtccataaatattttacaactgTGTGTAACTGTGTGCATAtgtgaaattaaacaaaaaccatGTCATTGTATTAAGGAAATATATGGCAATCTGGAAATATTAACAATTCTGATTATACTTTAATTCTAGAGTCATTAAGCCTCTCGTTTTACCAGTTTTTATCACTGTGAATGTACATTTGATAAGTTCACCAGGTAATGCCTGGTAAGTAACATCTCAAAAAAGCAATAAGCCCCAAGTCATGGTTTACAGTGAATTAATGTCAGCTAAGTTGCCTTGTAATGCACCATACAGGTATCTTTACTGAAATTAATGTATATTCTTATTCAGGTAGCTTTTATGGGAAGGCCTTTGCCAGTGGGTGGTAAGTGCGGttgatttactttaataaaaccaCAGAGCCCTTTCTAACAAATCATAATGACTGCTATGTTTTAAACCTCATATAGATATAGAAGTAGgatccccaactaagcaagtcGGAGGCAACAGCTGCtaggaaccaaaactccatctgtgacagaatagagaaaaaaccTTCGGAGAAACCAACTGCAGCAAAGTCAGATTGTCTAAAGGAATGATCTGGTCCCTGGGGTTTTGTCTGGGTGATGAGGTCTTCACTGGGGATCTGTCTctggggctcatctaggtgttcagGTCTCTGCTAATTCATGAGTTCACCCTTACATATAGTCTTACATAAATCCGATTAAACAACTATTAAGCATATTTTCACACGCTGCCCCGAGGGAGGGCTCTGCAGCCAGAATGTAGGCCAAAACCATTGAGAGTGAGGTGTTGGGGTGGAGGATGGATGCAAGAAAACTGTCATAATACAAGGGTAAGCTGGCTGtgactatttatacacacacaatgagCTAGTTAGGAAAACTAGCTAAAGCTGCTACACCTGTGTATTTTGAGTTCCTTGCCTCAGTCAGCTTTggtttgcttagttggggacacttaatttccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216443 lncRNA downstream 86886 14169728 ~ 14172799 (-) True LOC122326149
XR_006247434.1 lncRNA downstream 86886 14170402 ~ 14172799 (-) False LOC122326149
XR_006247433.1 lncRNA downstream 86925 14170402 ~ 14172760 (-) False LOC122326149
XR_006247432.1 lncRNA downstream 87233 14170402 ~ 14172452 (-) False LOC122326149
TU216437 lncRNA downstream 106275 14146766 ~ 14153410 (-) False G146536
TU216558 lncRNA upstream 178332 14441999 ~ 14442891 (-) True G146622
XR_006247420.1 lncRNA upstream 607581 14871248 ~ 14873810 (-) True LOC122326073
TU216733 lncRNA upstream 607590 14871257 ~ 14873599 (-) False LOC122326073
TU216762 lncRNA upstream 689544 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 905009 15168676 ~ 15168913 (-) True G146803
XM_043220833.1 mRNA downstream 7377 14243151 ~ 14252308 (-) True rskrb
XM_043221597.1 mRNA downstream 17060 14233548 ~ 14242625 (-) True aldocb
XM_043220889.1 mRNA downstream 26624 14227762 ~ 14233061 (-) True pigs
XM_043220890.1 mRNA downstream 32419 14223143 ~ 14227266 (-) True srsf1b
XM_043220891.1 mRNA downstream 36995 14218607 ~ 14222690 (-) True dynll2b
XM_043220701.1 mRNA upstream 2964 14266631 ~ 14274947 (-) True LOC122326026
XM_043221647.1 mRNA upstream 15896 14279563 ~ 14322157 (-) True chm
XM_043222001.1 mRNA upstream 227462 14491129 ~ 14522022 (-) True LOC122326828
XM_043222002.1 mRNA upstream 227462 14491129 ~ 14522020 (-) False LOC122326828
XM_043221936.1 mRNA upstream 267252 14530919 ~ 14534348 (-) True hmgb3b
XR_006247436.1 other downstream 32419 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 37012 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 392072 13866415 ~ 13867613 (-) True LOC122326201
XR_006247558.1 other downstream 814478 13445078 ~ 13445207 (-) True LOC122327025
TU215846 other downstream 1158442 13100190 ~ 13101243 (-) False LOC122326016
TU216757 other upstream 652311 14915978 ~ 14920398 (-) False stc2b
TU217094 other upstream 1890697 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1890697 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 2040190 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 2075560 16339227 ~ 16339716 (-) True G147087

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030886 True 1348 mRNA 0.48 6 NC_007113.7 24352497 ~ 24355324 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_01328278_01333798.mRNA True 1287 mRNA 0.50 6 CI01000320 1328250 ~ 1333798 (-)