RNA id: XM_043222001.1


Basic Information

Item Value
RNA id XM_043222001.1
length 6019
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC122326828
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 14491129 ~ 14522022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acagacagcCAGAGCggcacagagacagacagaggtaGAGCAGGGGCAGGAGACGCACCACTCCATCCGGCAACCATGACAACCGAGGCAAGCGCGCGCCAAGCCCTCGTACCCTCACGCCACCGATAACACGACCCGGAACGCTTCGTCCGTTCGGGTCCTTTCACCTGGGGTTAATTCTGCTCTCTCCTGCCGTTCATCAGGGTGGGCTGAACCCGGATCAAAGCCGACAGCCGGAGACCCGTCGACGGAGTCCCCGAGGTGGGCTTAATAACGCTCAATGGTCCTCCTCCGGAGCCAACGACCTGCCGGCAGACTCGGAGACGGAATTGTCTTGAAAACCGCCCGCGAGACCGAGGAGACAAAACATGTAAGCCGCATGACACGGGCTTTATCTGGACTTGAGTCCACATGAACCCCATGGCGCAGCTGTACTACAACAAGGCCCGTAACTCCCCGTACCGCGATCGCATCCCGCTGCAGATCGTGAGGGCGGAGGTTGAGCTGTCTGCCAAGGAACGAGCCTACCTGACGGCGGTGGAGAAGGGAGACTATGCCGGAGTTAAACAGGCTCTTGAGGAGGCCGAGATCTATTACAACATCAACGTCAATTGTCTGGACCCGTTGGGCCGCAGCGCGCTCCTCATCGCTATTGAGAACGAAAACCTGGAGGTGATGGAGCTGCTGTTGAGTCATGGCGTGCACATGGGCGACGCGCTCCTCTACTCCATCCGCAAGGAGGTGGTGGGAGCCGTGGAGTTGCTGCTATCCTACAAGAAGCCAAGTGGAGAGAAACAGGTTCCTTCTCACATGATGGACACACAGTTTTCGGAGTTTACGCCCGATATCACACCAATCATGTTGGCTGCCCACACTAACAACTACGAGATAATCAAGCAATTAGTTCAACGAAAGGTCACCATCCCGCGACCACACCAGATCCGCTGCGACTGCGTGGAGTGTGTATCGAGCTCCGAAGTGGACAGCCTGCGGCACTCCCGTTCACGTCTAAACATCTACAAAACTCTTGCCAGCCCCTCTCTTATCGCCCTTTCCAGCGAAGACCCCATCCTCACTGCGTTCAGACTGGGCTGGGAGCTGAAGGAGCTCAGTAAGGTGGAGAATGAGTTCCGGCAGGAGTACGAAGAGCTGTCGCAGCAGTGCAAGCTTTTTGCTAAAGACTTGCTGGATCAGGCCCGCAGCTCCTGTGAGCTGGAGACCATCCTCAACCATCGGGATGACCACAGTGAAGAACTGGACCCCCATGAGTGCAGAGACCTGGCCAAGCTCAAGCTAGCCATCAAATACCACCAGAAAGAGTTTGTAGCTCAGCCCAACTGCCAGCAGCTCCTGGCAACACTGTGGTACGACGGCTTCCCAGGATGGAGAAGACGTCACTGGGCTGTGAAGCTTGTCACTTGCTTCATCATTGGCCTGCTCTTCCCTGTCTTCTCCCTCATATACCTTCTGGCTCCAAAGAGCACCCTGGGAACCTTCATCAAGAAACCTTTCATCAAGTTCATCTGCCACACTGCCTCCTACCTgaccttcctcttcctcctcctcctcgcctCACAGCATATCGTTCAGACTGACCTGCATGTACAGGGACCTCCACCCACTATTGTAGAGTGGATGATCTTACCCTGGGTTCTAGGCTTCATCTGGGCCGAGATTAAAGAGATGTGGGATGGCGGTTTCACAGAGTACATCCATGACTGGTGGAACCTGATGGATTTTGCAATGAACTCTCTCTACCTGGCTACTATATCTCTTAAAATGGTGGCCTACTTTAAGTACAACAGCTCTCGTCCTCGTGTGGAGTGGGAGATGTGGCACCCTACGCTTATCGCCGAGGCTCTATTCGCAATCGCCAACATCTTCAGCTCTCTGCGTCTCATCTCTCTATTCACCGCCAACTCTCACTTGGGCCCACTGCAGATCTCTCTTGGCCGCATGCTCCTGGACATCCTCAAGTTCCTTTTCATCTACTGTCTGGTGCTGCTGGCTTTCGCCAACGGCCTTAACCAGCTCTACTTCTACTACGAGACGAAGGCGTCCGAAGAGCCCAACCACTGCAAAGGGATCCGCTGTGAGAAGCAGAATAATGCCTTCTCTACGCTGTTTGAAACTCTTCAGTCTCTCTTCTGGTCTGTGTTTGGGCTGCTGAATCTGTACGTCACTAACGTGAAGGCTCGTCATGAGTTCACCGAGTTTGTGGGGGCCACCATGTTCGGCACTTATAATGTCATCTCACTGGTGGTGCTGCTGAACATGCTCATCGCTATGATGAACAACTCTTACCAACTCATTGCTGATCACGCAGACATCGAGTGGAAATTTGCTCGTACCAAGCTGTGGATGAGCTACTTTGATGAGGGAGGCACGTTACCACCACCCTTCAACATCGTACCCAGTCCAAAGTCCGTGTGGCACCTGTGTGTGTGGCTGCACTGCCGTCTGTGTGGACATGGAGAGCCCAGACACGAGGAGGAGTGTAAACACGAAAACCTCAAAGAGTTCACGGAAAGGCATGCTGATAACCTCATTCAGAACCAGCACTACCAGGAGGTGATCAGAAACTTGGTAAAGCGATATGTTGCAGCCATGATCCGCAGTGCCAAAACAGATGAAGGGCTGACAGAGGAGAACTTCAAGGAACTTAAGCAGGACATCTCCAGCTTCCGCTACGAGGTTCTTGACCTTCTGGGCAACCGTAAACCACCACGACGCACATATTCTTCTAGTAGCGAGGCCACTCAGCAGGACGAAGTAGCTGAGCCCGAGGAAGAAGAGGACTCAGAGAGTGATGGGCTTGGAGAACTCAGATGTGGGGATGGAGGAGAGTCGTCCAGATCCAAAGCATCTACATCCTTCTCCCAGTGTTACAGGAGAAACAGAGAGTCCCAGTTCAGCGTATCGGCTCTCTTCAAGTCCATGTCGGGACCAGCCAGGGAACACCCGGAAAGCAATGGCTTGAGAAACAACATACCCCACTCGTCTGCATTTGTGCGGACCAGCAGCCGCCTGCAGCGCTTTTCGCGCTCCAAGAAAAACTCTTTGCATCGTTTGGGAATGCTAATGTCACGAATGAATGGACATATCCCAGACCAACATGCAGAGACCCCGGGAGATCAGCAACCTGCATACAGCATCTCAGACCAATTACCGCAAACATCTTGGCAAGGTCCCCAGGTTCTGTCAAAGGTAACTCGGAGCGAGATGCACCTGCACACGCTGGGAACTGAACAGGACCCAACGCAGGCCACATCTCAACGGGCAAACGGCAGGGACAGTCTCATCCTCCGGCCGCCCAGCCACTCGCTGCCCCCTCTGCACTGTGCTTCCAGCCTGACCACTTCCAGTGCTCAGCTATTGGCCTCCAGTGATGATTTGTGCCATGGCTGGATGGGACCCTGTGACAGTTTGGGCTCCTCCAGCTGGGAACAAGAGGAGTCAGTTACAACACAGCTGTAGAGGCGAAGTCAGCTCGTTACCATGTTTCACAGCTACCCAAACTATCAAAACCCTGCTCCTGGAGAGCTAATGTTCGGCTCCAaccccaatcaaacacacctgaaccagctaatcaaggccTTCAGGGTTACTTGATGGTTATAGGGAGGAGCGTTAGAACTGATGTATGAAGGATGGTAGTTCCCCAGCAGCGGGGGTTGGAGATCTCTGGCTGAAGGTGACTGGTTCGAAGCTTCAGCAACAGTCAAGGGCCTGTGACACTCATACTTTAGCATATTTATGCTTTGCACACATCAGGCCTTATTCACATAACACGAGCAAAACGAATTGTGTGAAAACATTCGTAACATCAATGCAGGTGTCAGTGCGACCATTCACGCATCTCCTACCCTAACAATTAGGGAAATTTGTTCCACTCGTGTTTCTTGAGTGAGACCACTGGGAATTTATATTCAAAAGTGAAGAAGCCCATGTAATTTGTGTgtggggaaaaatatatattttacactcaTTCTGCCATTGGTTGGACACTACAAAGTAAAGTGAAACTGTGGGCTGCACCTGAATTCATACTTTCCTACTCTATagtataaagaaaaaagaaaaaaaaaaaaggcatgtgAAAAGACTTCACAGTAGTTATACATCCAGTTGACACTTTACTATAACTTTACCTATATGAGTCCTCGGGGGAGGATTTGTGAATAGGAAATAGCAGTGAACTGACGTTGGTAGGTTGCATAAGTATACCAAGTCTGGATTGCACTCATACTACACACATTCATGCTATATAGAAGTTCCTAACTTCAGGCTCATTGAAGATTTGCAAGGTATCACCGACGTTAGTAACAGTCTCATGCAGACAAATGAAtctttggtttggtttggaAAGGACTTGCTCAAGGGTCTCACAACTGACAAAATTGAGGCCGCAACTGCCTAATTGACTGCCCATGCCCAATAAAGGTAgataaggaaaataaaatactaccaTTACAAATAGAAATTGGTTTGATTCATATCCGTCATTTGGATTGACATCCccttttcttaaaatgttttaaaatccaaaatgagagggttttttttttttttagcgtcTTTTGACTACTCCATTTATCAAGTAGGTATTAACATGTGACCTACAACATCAGTCGTATCACTTCCCCATAATTGACAAATCCTCTCACCTGGTCTTACGGGTTAGTAAAATATCCATCTCTGCACACTTCAAAGTATTAGAAGTAGTAGGCCATCGAGAGAATTTGGTCGCGATGCTGATTTAACATTACCTGTCACACACTATTGGAAGAGGTGCAGGAATAGCATTACATGTTTCAGGAAATCAGCTTATGAACATCTTAAGCTGCATTTTCATTgcacagaacattttaaatatgacttttggAATTTGACCCCTTGTGGCAATAGCAATTAatacatgatttttatttttagcaaaatgtCAGTATTATAACTAGcaaaaattccaaaaaaagctaaacactTCTGagctctttaaaatattttatgcgaGTTGCTCGGTTGCACCCTTAAGTGTGTGTACTTGCAATATGTATTAAGTATTTGATAAATGGGAAGGTGTTCAGACGTACCCTTAAGAAATGTAGCAACCCTCTTGCACAACTTAATCCAAATGTAAAAACCTCTGTTTATTTTGCAAGGGTAtaagttaattttttaaaaccagatgcatttacttttaaattaccATCTGCACCGCATGCTAAGGTCTGGTGCTGTAACGTCTTTCATCGTCAACGCTAGtgcaatatttttgaaaagcttAAACTGCAGGCTTGAACGCGTGTACTATAGAAAGCCCTTTTTAGAGCTCAGAAAGTGGAACCAATGTATGAAAAATGTCTGATATTATGTAAAGTACTTACAGATCTTTAATTGACATTATTATATCAGAAGATACAGATAACAGAATGTGGACCTAAAGATATATGCATCTTTGTAATACAGTTGTGTCTACACAATGTTTATAAAAGGGCACCAAATGGTTTCAAATGAAGCTTAAAAATATGCATCTATGTGACTGGTAAtatcttttcatttgtttttcactgATGTTTTATAGCAATGGTGTCAAATAGTGAACCGTCTCCTAAAAACACAACGCATGATCTAATATTTAGAGTTTGCTCAATACCGGGAGCTTAGTAGAGTTAGTTTTTCCTCATGGCTGGTCTGTAGACACTGAACCAGTCACGAATAATATATCAGACTCATTTGCTGCATTAATAACCACTCATTTGTGTTGCCTCATTACGGTTAATTTAAGCTGTAAGTTCTCCACAGtaaattctaaatgtcttttgtaaaatttattttctaacaaattatttttctattcttttttgaCATAAAGGTATGTTTTTTGTTACACTTCATGTAGGATTTATGGGTGAAGATTTTTTTATACCTTGATTTCAAATAGAGGCTTTAGTGGTTTTCTAATTCACTTTTGTTTTGAGGTCtcatgaacaaaataaatctcATCTGGGTTAACGTC

Function

GO: NA

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216558 lncRNA downstream 48238 14441999 ~ 14442891 (-) True G146622
TU216443 lncRNA downstream 318330 14169728 ~ 14172799 (-) True LOC122326149
XR_006247434.1 lncRNA downstream 318330 14170402 ~ 14172799 (-) False LOC122326149
XR_006247433.1 lncRNA downstream 318369 14170402 ~ 14172760 (-) False LOC122326149
XR_006247432.1 lncRNA downstream 318677 14170402 ~ 14172452 (-) False LOC122326149
XR_006247420.1 lncRNA upstream 349226 14871248 ~ 14873810 (-) True LOC122326073
TU216733 lncRNA upstream 349235 14871257 ~ 14873599 (-) False LOC122326073
TU216762 lncRNA upstream 431189 14953211 ~ 15001740 (-) True G146753
TU216818 lncRNA upstream 646654 15168676 ~ 15168913 (-) True G146803
TU216843 lncRNA upstream 737886 15259908 ~ 15260460 (-) True G146822
XM_043221647.1 mRNA downstream 168972 14279563 ~ 14322157 (-) True chm
XM_043220701.1 mRNA downstream 216182 14266631 ~ 14274947 (-) True LOC122326026
XM_043220833.1 mRNA downstream 238821 14243151 ~ 14252308 (-) True rskrb
XM_043221597.1 mRNA downstream 248504 14233548 ~ 14242625 (-) True aldocb
XM_043220889.1 mRNA downstream 258068 14227762 ~ 14233061 (-) True pigs
XM_043221936.1 mRNA upstream 8897 14530919 ~ 14534348 (-) True hmgb3b
XM_043221794.1 mRNA upstream 12859 14534881 ~ 14547812 (-) False mtmr1b
XM_043221792.1 mRNA upstream 12859 14534881 ~ 14547812 (-) False mtmr1b
XM_043221788.1 mRNA upstream 12859 14534881 ~ 14547812 (-) False mtmr1b
XM_043221787.1 mRNA upstream 12859 14534881 ~ 14547812 (-) False mtmr1b
TU216464 other downstream 227462 14259685 ~ 14263667 (-) True G146556
XR_006247436.1 other downstream 263863 14223143 ~ 14227266 (-) False srsf1b
TU216432 other downstream 268456 14218611 ~ 14222673 (-) False dynll2b
TU216130 other downstream 623516 13866415 ~ 13867613 (-) True LOC122326201
XR_006247558.1 other downstream 1045922 13445078 ~ 13445207 (-) True LOC122327025
TU216757 other upstream 393956 14915978 ~ 14920398 (-) False stc2b
TU217094 other upstream 1632342 16154364 ~ 16160995 (-) True G146999
TU217095 other upstream 1632342 16154364 ~ 16162231 (-) False G146999
TU217241 other upstream 1781835 16303857 ~ 16304711 (-) False LOC122326033
TU217243 other upstream 1817205 16339227 ~ 16339716 (-) True G147087

Expression Profile